Hb_001619_050

Information

Type -
Description -
Location Contig1619: 58196-62191
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17010g
description POPTRDRAFT_818483; hypothetical protein
nr
ID XP_012067852.1
description PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
swissprot
ID Q9SIE0
description Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Arabidopsis thaliana GN=ALKBH2 PE=2 SV=2
trembl
ID A0A067LB78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15776 PE=4 SV=1
Gene Ontology
ID GO:0003723
description PREDICTED: uncharacterized protein LOC105630599 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14528: 58230-62187 , PASA_asmbl_14529: 60617-60880
cDNA
(Sanger)
(ID:Location)		 030_B08.ab1: 61369-62187 , 042_D20.ab1: 59881-62083 , 046_C22.ab1: 59856-62084

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_050 0.0 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
2 Hb_000445_140 0.0399310517 - - hypothetical protein RCOM_0561550 [Ricinus communis]
3 Hb_000640_160 0.0720144586 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
4 Hb_001014_100 0.0722727605 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
5 Hb_003225_020 0.072844718 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
6 Hb_017151_010 0.0744289836 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
7 Hb_002870_020 0.0764840608 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
8 Hb_025557_050 0.0780297293 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
9 Hb_005496_050 0.0817391886 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
10 Hb_005895_010 0.0820970522 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
11 Hb_032202_080 0.0844467726 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
12 Hb_041327_020 0.0898240796 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000457_230 0.0900634607 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
14 Hb_004096_240 0.0911955469 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
15 Hb_132840_110 0.0916174561 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
16 Hb_001377_110 0.0930638404 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
17 Hb_001789_190 0.0937327845 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
18 Hb_031284_010 0.0940751828 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
19 Hb_003186_020 0.094226357 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
20 Hb_000362_170 0.0945285684 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]

Gene co-expression network

sample Hb_001619_050 Hb_001619_050 Hb_000445_140 Hb_000445_140 Hb_001619_050--Hb_000445_140 Hb_000640_160 Hb_000640_160 Hb_001619_050--Hb_000640_160 Hb_001014_100 Hb_001014_100 Hb_001619_050--Hb_001014_100 Hb_003225_020 Hb_003225_020 Hb_001619_050--Hb_003225_020 Hb_017151_010 Hb_017151_010 Hb_001619_050--Hb_017151_010 Hb_002870_020 Hb_002870_020 Hb_001619_050--Hb_002870_020 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050 Hb_000445_140--Hb_002870_020 Hb_000640_160--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_007821_020 Hb_007821_020 Hb_003225_020--Hb_007821_020 Hb_031284_010 Hb_031284_010 Hb_003225_020--Hb_031284_010 Hb_007283_010 Hb_007283_010 Hb_003225_020--Hb_007283_010 Hb_003225_020--Hb_005731_110 Hb_017151_010--Hb_025557_050 Hb_053079_020 Hb_053079_020 Hb_017151_010--Hb_053079_020 Hb_001789_190 Hb_001789_190 Hb_017151_010--Hb_001789_190 Hb_000115_280 Hb_000115_280 Hb_017151_010--Hb_000115_280 Hb_017151_010--Hb_032202_080 Hb_003228_100 Hb_003228_100 Hb_002870_020--Hb_003228_100 Hb_004032_370 Hb_004032_370 Hb_002870_020--Hb_004032_370 Hb_000663_020 Hb_000663_020 Hb_002870_020--Hb_000663_020 Hb_077026_010 Hb_077026_010 Hb_002870_020--Hb_077026_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.7944 52.392 103.106 57.2854 59.8309 60.8505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5752 28.2183 37.6083 27.8958 90.5561

CAGE analysis