Hb_001014_100

Information

Type -
Description -
Location Contig1014: 95356-103930
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16110g
description POPTRDRAFT_554690; RNA recognition motif-containing family protein
nr
ID XP_012088718.1
description PREDICTED: protein MEI2-like 4 [Jatropha curcas]
swissprot
ID Q64M78
description Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1
trembl
ID B9GZ23
description RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0003s16110g PE=4 SV=2
Gene Ontology
ID GO:0000166
description protein mei2-like 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00700: 95388-95663 , PASA_asmbl_00701: 96352-97745 , PASA_asmbl_00702: 96471-96882 , PASA_asmbl_00703: 98899-103723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_100 0.0 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
2 Hb_000445_140 0.0613544854 - - hypothetical protein RCOM_0561550 [Ricinus communis]
3 Hb_005496_050 0.0695335637 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
4 Hb_000261_050 0.0697395136 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
5 Hb_001619_050 0.0722727605 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
6 Hb_132840_110 0.0749963172 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_002811_270 0.0843655476 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
8 Hb_032202_220 0.0873488504 - - ring finger protein, putative [Ricinus communis]
9 Hb_017151_010 0.0889084471 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
10 Hb_002027_080 0.0905370592 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
11 Hb_005601_020 0.090860756 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
12 Hb_002150_140 0.0929036864 - - PREDICTED: girdin-like [Jatropha curcas]
13 Hb_041327_020 0.0931563207 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000665_120 0.0936115793 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
15 Hb_001660_120 0.0952513229 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
16 Hb_031091_020 0.0957086777 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_025557_050 0.0957559015 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
18 Hb_001876_040 0.096108094 - - PREDICTED: mucin-5B [Jatropha curcas]
19 Hb_087313_010 0.0969920381 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007765_100 0.097089643 - - PREDICTED: helicase SKI2W [Jatropha curcas]

Gene co-expression network

sample Hb_001014_100 Hb_001014_100 Hb_000445_140 Hb_000445_140 Hb_001014_100--Hb_000445_140 Hb_005496_050 Hb_005496_050 Hb_001014_100--Hb_005496_050 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_001619_050 Hb_001619_050 Hb_001014_100--Hb_001619_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_000445_140--Hb_001619_050 Hb_000445_140--Hb_005496_050 Hb_017151_010 Hb_017151_010 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050 Hb_002870_020 Hb_002870_020 Hb_000445_140--Hb_002870_020 Hb_006816_180 Hb_006816_180 Hb_005496_050--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_005496_050--Hb_041327_020 Hb_005496_050--Hb_001619_050 Hb_002150_140 Hb_002150_140 Hb_005496_050--Hb_002150_140 Hb_032202_220 Hb_032202_220 Hb_000261_050--Hb_032202_220 Hb_000193_330 Hb_000193_330 Hb_000261_050--Hb_000193_330 Hb_000261_050--Hb_005496_050 Hb_001876_040 Hb_001876_040 Hb_000261_050--Hb_001876_040 Hb_002027_080 Hb_002027_080 Hb_000261_050--Hb_002027_080 Hb_000640_160 Hb_000640_160 Hb_001619_050--Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_001619_050--Hb_003225_020 Hb_001619_050--Hb_017151_010 Hb_001619_050--Hb_002870_020 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_132840_110--Hb_002811_270 Hb_002811_270--Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_002811_270--Hb_002326_040 Hb_001518_080 Hb_001518_080 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_000373_080 Hb_000373_080 Hb_002811_270--Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_002811_270--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02765 4.05035 7.06275 5.4086 4.21449 3.9338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33809 1.90584 3.62706 2.9583 8.60899

CAGE analysis