Hb_000086_440

Information

Type -
Description -
Location Contig86: 355457-361325
Sequence    

Annotation

kegg
ID rcu:RCOM_0543260
description brca1 associated ring domain, putative
nr
ID XP_012085262.1
description PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
swissprot
ID F4I443
description BRCA1-associated RING domain protein 1 OS=Arabidopsis thaliana GN=BARD1 PE=1 SV=1
trembl
ID B9SKQ1
description Brca1 associated ring domain, putative OS=Ricinus communis GN=RCOM_0543260 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein breast cancer susceptibility 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60745: 355468-355602 , PASA_asmbl_60746: 355928-357220 , PASA_asmbl_60747: 357320-358028 , PASA_asmbl_60748: 358040-358679 , PASA_asmbl_60749: 358759-360534 , PASA_asmbl_60750: 360555-361345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_440 0.0 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
2 Hb_001109_060 0.0495342373 - - amino acid transporter, putative [Ricinus communis]
3 Hb_005227_010 0.0676815266 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
4 Hb_162275_040 0.0689358484 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000035_170 0.0707624739 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
6 Hb_132840_110 0.0718747226 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_006501_090 0.0742553591 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
8 Hb_007635_040 0.0744437737 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
9 Hb_008511_020 0.0761092625 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
10 Hb_000441_090 0.0775508816 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
11 Hb_000679_270 0.0780282996 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
12 Hb_000082_070 0.081263681 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
13 Hb_002539_110 0.0813654372 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
14 Hb_089140_050 0.0819103706 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
15 Hb_012215_010 0.0825661863 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
16 Hb_000664_110 0.0831658351 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
17 Hb_000183_050 0.0848784949 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
18 Hb_000261_100 0.0850024001 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
19 Hb_000214_050 0.0850964146 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
20 Hb_000960_040 0.0854284851 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]

Gene co-expression network

sample Hb_000086_440 Hb_000086_440 Hb_001109_060 Hb_001109_060 Hb_000086_440--Hb_001109_060 Hb_005227_010 Hb_005227_010 Hb_000086_440--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_000086_440--Hb_162275_040 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_132840_110 Hb_132840_110 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_001109_060--Hb_005227_010 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_000008_270 Hb_000008_270 Hb_005227_010--Hb_000008_270 Hb_005227_010--Hb_017295_010 Hb_002539_110 Hb_002539_110 Hb_005227_010--Hb_002539_110 Hb_005227_010--Hb_162275_040 Hb_162275_040--Hb_002539_110 Hb_010272_010 Hb_010272_010 Hb_162275_040--Hb_010272_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_000035_170--Hb_006501_090 Hb_012053_080 Hb_012053_080 Hb_000035_170--Hb_012053_080 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_003645_060 Hb_003645_060 Hb_000035_170--Hb_003645_060 Hb_000563_130 Hb_000563_130 Hb_000035_170--Hb_000563_130 Hb_001655_030 Hb_001655_030 Hb_000035_170--Hb_001655_030 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270 Hb_006501_090--Hb_001655_030 Hb_109980_010 Hb_109980_010 Hb_006501_090--Hb_109980_010 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_001279_030 Hb_001279_030 Hb_006501_090--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_006501_090--Hb_000039_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27137 7.50193 7.13883 9.93683 9.64232 8.5507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11986 3.09903 5.63795 6.44462 11.6444

CAGE analysis