Hb_001109_060

Information

Type -
Description -
Location Contig1109: 133562-135960
Sequence    

Annotation

kegg
ID rcu:RCOM_0866340
description amino acid transporter, putative
nr
ID XP_002519879.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9C6S5
description Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1
trembl
ID B9S1L4
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0866340 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable polyamine transporter at1g31830 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03355: 133571-135782 , PASA_asmbl_03356: 135624-135737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001109_060 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000086_440 0.0495342373 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
3 Hb_005227_010 0.053102275 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
4 Hb_162275_040 0.0692078548 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000664_110 0.0729009655 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
6 Hb_017295_010 0.0753466621 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
7 Hb_005946_210 0.0758017644 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
8 Hb_000441_090 0.0785316476 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
9 Hb_000062_020 0.0798803051 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_001948_130 0.0831344322 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
11 Hb_000960_040 0.0835835883 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
12 Hb_000107_210 0.0837901616 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
13 Hb_012215_010 0.0854183608 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
14 Hb_008511_020 0.085606344 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
15 Hb_010272_010 0.0858917044 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
16 Hb_004109_230 0.0864636502 - - heat shock protein binding protein, putative [Ricinus communis]
17 Hb_132840_110 0.0868490974 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
18 Hb_006501_090 0.0870340419 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
19 Hb_000258_070 0.0882059292 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
20 Hb_000780_190 0.0884925424 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001109_060 Hb_001109_060 Hb_000086_440 Hb_000086_440 Hb_001109_060--Hb_000086_440 Hb_005227_010 Hb_005227_010 Hb_001109_060--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_000086_440--Hb_005227_010 Hb_000086_440--Hb_162275_040 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_132840_110 Hb_132840_110 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_000008_270 Hb_000008_270 Hb_005227_010--Hb_000008_270 Hb_005227_010--Hb_017295_010 Hb_002539_110 Hb_002539_110 Hb_005227_010--Hb_002539_110 Hb_005227_010--Hb_162275_040 Hb_162275_040--Hb_002539_110 Hb_010272_010 Hb_010272_010 Hb_162275_040--Hb_010272_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_000664_110--Hb_010272_010 Hb_012215_010 Hb_012215_010 Hb_000664_110--Hb_012215_010 Hb_000664_110--Hb_005946_210 Hb_000640_070 Hb_000640_070 Hb_000664_110--Hb_000640_070 Hb_000362_170 Hb_000362_170 Hb_000664_110--Hb_000362_170 Hb_000107_210 Hb_000107_210 Hb_017295_010--Hb_000107_210 Hb_009529_030 Hb_009529_030 Hb_017295_010--Hb_009529_030 Hb_017295_010--Hb_000008_270 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_005946_210--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_005946_210--Hb_008226_090 Hb_005946_210--Hb_012215_010 Hb_005946_210--Hb_002539_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.4125 30.9443 23.9796 44.7337 37.7886 39.6972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1773 16.4035 22.2113 22.3762 42.8259

CAGE analysis