Hb_162275_040

Information

Type -
Description -
Location Contig162275: 18949-27669
Sequence    

Annotation

kegg
ID rcu:RCOM_0085050
description hypothetical protein
nr
ID XP_002527860.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IYM4
description Protein DEFECTIVE IN EXINE FORMATION 1 OS=Arabidopsis thaliana GN=DEX1 PE=2 SV=1
trembl
ID B9SPE1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0085050 PE=4 SV=1
Gene Ontology
ID GO:0005783
description defective in exine formation protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14662: 18868-24483 , PASA_asmbl_14664: 24492-27520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162275_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000086_440 0.0689358484 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
3 Hb_002539_110 0.0689405638 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
4 Hb_001109_060 0.0692078548 - - amino acid transporter, putative [Ricinus communis]
5 Hb_010272_010 0.0721172671 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
6 Hb_005227_010 0.072328226 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
7 Hb_006355_020 0.0747188879 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
8 Hb_000347_560 0.0781470526 - - -
9 Hb_171334_010 0.0795067903 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
10 Hb_000082_070 0.0796093579 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
11 Hb_004701_050 0.0802697955 - - alpha1 family protein [Populus trichocarpa]
12 Hb_000035_410 0.0828322531 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
13 Hb_000960_040 0.0837776977 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
14 Hb_005946_210 0.0838420523 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
15 Hb_009486_080 0.084705403 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
16 Hb_000183_050 0.0848637906 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
17 Hb_012215_010 0.0852179116 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
18 Hb_000664_110 0.0874731415 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
19 Hb_000640_070 0.0878070795 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
20 Hb_002014_040 0.0884522438 - - site-1 protease, putative [Ricinus communis]

Gene co-expression network

sample Hb_162275_040 Hb_162275_040 Hb_000086_440 Hb_000086_440 Hb_162275_040--Hb_000086_440 Hb_002539_110 Hb_002539_110 Hb_162275_040--Hb_002539_110 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_010272_010 Hb_010272_010 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_000086_440--Hb_001109_060 Hb_000086_440--Hb_005227_010 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_132840_110 Hb_132840_110 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_012215_010 Hb_012215_010 Hb_002539_110--Hb_012215_010 Hb_002539_110--Hb_010272_010 Hb_000362_170 Hb_000362_170 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080 Hb_001109_060--Hb_005227_010 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_010272_010--Hb_012215_010 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_000008_270 Hb_000008_270 Hb_005227_010--Hb_000008_270 Hb_005227_010--Hb_017295_010 Hb_005227_010--Hb_002539_110 Hb_000284_230 Hb_000284_230 Hb_006355_020--Hb_000284_230 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_001194_020 Hb_001194_020 Hb_006355_020--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_006355_020--Hb_001059_130 Hb_006355_020--Hb_000086_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.165 11.371 12.0987 15.3868 16.3311 16.1823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65028 4.43047 7.36585 8.89956 16.9389

CAGE analysis