Hb_022250_100

Information

Type -
Description -
Location Contig22250: 70367-73973
Sequence    

Annotation

kegg
ID rcu:RCOM_1503060
description calnexin, putative
nr
ID XP_002511066.1
description calnexin, putative [Ricinus communis]
swissprot
ID P29402
description Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1
trembl
ID B9RA41
description Calnexin, putative OS=Ricinus communis GN=RCOM_1503060 PE=3 SV=1
Gene Ontology
ID GO:0005739
description calnexin homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23034: 70359-73834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_100 0.0 - - calnexin, putative [Ricinus communis]
2 Hb_006355_020 0.0726833504 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
3 Hb_000041_300 0.0869188407 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
4 Hb_000684_350 0.0960476561 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
5 Hb_000958_070 0.0991003443 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
6 Hb_005250_010 0.0999086662 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
7 Hb_000562_050 0.1010395205 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
8 Hb_003632_030 0.1014285683 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
9 Hb_004225_040 0.1022390949 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
10 Hb_000320_470 0.1047091644 - - calcium-dependent protein kinase [Hevea brasiliensis]
11 Hb_004306_030 0.1050741321 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
12 Hb_001411_030 0.1061240907 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
13 Hb_026053_040 0.106889781 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001789_020 0.1075842206 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
15 Hb_162275_040 0.1111986781 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002233_130 0.1128043451 - - transporter, putative [Ricinus communis]
17 Hb_000260_560 0.1130089786 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
18 Hb_073973_150 0.1131315501 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
19 Hb_000172_350 0.1133062122 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
20 Hb_005211_020 0.113453382 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_022250_100 Hb_022250_100 Hb_006355_020 Hb_006355_020 Hb_022250_100--Hb_006355_020 Hb_000041_300 Hb_000041_300 Hb_022250_100--Hb_000041_300 Hb_000684_350 Hb_000684_350 Hb_022250_100--Hb_000684_350 Hb_000958_070 Hb_000958_070 Hb_022250_100--Hb_000958_070 Hb_005250_010 Hb_005250_010 Hb_022250_100--Hb_005250_010 Hb_000562_050 Hb_000562_050 Hb_022250_100--Hb_000562_050 Hb_000284_230 Hb_000284_230 Hb_006355_020--Hb_000284_230 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_001194_020 Hb_001194_020 Hb_006355_020--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440 Hb_000175_630 Hb_000175_630 Hb_000041_300--Hb_000175_630 Hb_004225_040 Hb_004225_040 Hb_000041_300--Hb_004225_040 Hb_000334_170 Hb_000334_170 Hb_000041_300--Hb_000334_170 Hb_026053_040 Hb_026053_040 Hb_000041_300--Hb_026053_040 Hb_000261_050 Hb_000261_050 Hb_000041_300--Hb_000261_050 Hb_000358_220 Hb_000358_220 Hb_000684_350--Hb_000358_220 Hb_000059_230 Hb_000059_230 Hb_000684_350--Hb_000059_230 Hb_012055_110 Hb_012055_110 Hb_000684_350--Hb_012055_110 Hb_000066_150 Hb_000066_150 Hb_000684_350--Hb_000066_150 Hb_006839_010 Hb_006839_010 Hb_000684_350--Hb_006839_010 Hb_000958_050 Hb_000958_050 Hb_000684_350--Hb_000958_050 Hb_000260_560 Hb_000260_560 Hb_000958_070--Hb_000260_560 Hb_011344_020 Hb_011344_020 Hb_000958_070--Hb_011344_020 Hb_004631_150 Hb_004631_150 Hb_000958_070--Hb_004631_150 Hb_002233_130 Hb_002233_130 Hb_000958_070--Hb_002233_130 Hb_000958_070--Hb_162275_040 Hb_000958_070--Hb_006355_020 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_156850_090 Hb_156850_090 Hb_000562_050--Hb_156850_090 Hb_022250_010 Hb_022250_010 Hb_000562_050--Hb_022250_010 Hb_001789_020 Hb_001789_020 Hb_000562_050--Hb_001789_020 Hb_000562_050--Hb_001059_130 Hb_033642_060 Hb_033642_060 Hb_000562_050--Hb_033642_060 Hb_000562_050--Hb_006355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.4013 96.5046 134.241 138.144 152.303 106.792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0604 23.9619 55.1105 102.112 250.819

CAGE analysis