Hb_004631_150

Information

Type -
Description -
Location Contig4631: 97810-105711
Sequence    

Annotation

kegg
ID rcu:RCOM_0338130
description GTP cyclohydrolase II, putative (EC:3.5.4.25)
nr
ID XP_012081626.1
description PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
swissprot
ID P47924
description Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic OS=Arabidopsis thaliana GN=RIBA1 PE=1 SV=2
trembl
ID A0A067KBX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18665 PE=3 SV=1
Gene Ontology
ID GO:0009570
description bifunctional riboflavin biosynthesis protein riba chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43864: 97834-103419 , PASA_asmbl_43866: 103443-105613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_150 0.0 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
2 Hb_000958_070 0.0809031579 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
3 Hb_003747_120 0.0846492864 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
4 Hb_000836_290 0.0856531796 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002014_040 0.0858451236 - - site-1 protease, putative [Ricinus communis]
6 Hb_000362_170 0.0961059104 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
7 Hb_001244_150 0.0963019 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
8 Hb_162275_040 0.0973156365 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009486_080 0.0974448194 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
10 Hb_000215_220 0.0975795108 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
11 Hb_000130_420 0.0975881414 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
12 Hb_000086_440 0.097719991 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
13 Hb_020141_040 0.0979400084 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
14 Hb_004912_030 0.0989791839 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
15 Hb_000260_560 0.0993369295 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
16 Hb_000684_350 0.0994271264 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
17 Hb_005895_010 0.102453298 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
18 Hb_139002_010 0.1033190904 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
19 Hb_000139_260 0.1037907439 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
20 Hb_001318_070 0.1061965602 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004631_150 Hb_004631_150 Hb_000958_070 Hb_000958_070 Hb_004631_150--Hb_000958_070 Hb_003747_120 Hb_003747_120 Hb_004631_150--Hb_003747_120 Hb_000836_290 Hb_000836_290 Hb_004631_150--Hb_000836_290 Hb_002014_040 Hb_002014_040 Hb_004631_150--Hb_002014_040 Hb_000362_170 Hb_000362_170 Hb_004631_150--Hb_000362_170 Hb_001244_150 Hb_001244_150 Hb_004631_150--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_000958_070--Hb_000260_560 Hb_011344_020 Hb_011344_020 Hb_000958_070--Hb_011344_020 Hb_002233_130 Hb_002233_130 Hb_000958_070--Hb_002233_130 Hb_162275_040 Hb_162275_040 Hb_000958_070--Hb_162275_040 Hb_006355_020 Hb_006355_020 Hb_000958_070--Hb_006355_020 Hb_000111_170 Hb_000111_170 Hb_003747_120--Hb_000111_170 Hb_007283_010 Hb_007283_010 Hb_003747_120--Hb_007283_010 Hb_000085_210 Hb_000085_210 Hb_003747_120--Hb_000085_210 Hb_008059_010 Hb_008059_010 Hb_003747_120--Hb_008059_010 Hb_031284_010 Hb_031284_010 Hb_003747_120--Hb_031284_010 Hb_001512_040 Hb_001512_040 Hb_000836_290--Hb_001512_040 Hb_000261_050 Hb_000261_050 Hb_000836_290--Hb_000261_050 Hb_171334_010 Hb_171334_010 Hb_000836_290--Hb_171334_010 Hb_000347_040 Hb_000347_040 Hb_000836_290--Hb_000347_040 Hb_032202_220 Hb_032202_220 Hb_000836_290--Hb_032202_220 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_001005_030 Hb_001005_030 Hb_000362_170--Hb_001005_030 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_000573_060 Hb_000573_060 Hb_001244_150--Hb_000573_060 Hb_002641_130 Hb_002641_130 Hb_001244_150--Hb_002641_130 Hb_001244_150--Hb_002233_130 Hb_004324_330 Hb_004324_330 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_000608_300 Hb_000608_300 Hb_001244_150--Hb_000608_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0306 19.1373 22.1479 20.1508 25.1428 15.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.81952 8.56444 11.2923 9.60063 26.8999

CAGE analysis