Hb_001512_040

Information

Type -
Description -
Location Contig1512: 23842-28433
Sequence    

Annotation

kegg
ID rcu:RCOM_1065260
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012071744.1
description PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
swissprot
ID Q8VZV7
description Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=2 SV=1
trembl
ID A0A067LD32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10231 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12800: 23918-28508 , PASA_asmbl_12801: 23918-28508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_040 0.0 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
2 Hb_000101_080 0.0594410173 - - PREDICTED: protein CREG1 [Jatropha curcas]
3 Hb_032202_220 0.0742736194 - - ring finger protein, putative [Ricinus communis]
4 Hb_019181_040 0.077129579 - - component of oligomeric golgi complex, putative [Ricinus communis]
5 Hb_004754_050 0.0878809104 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
6 Hb_002326_040 0.091312674 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
7 Hb_000836_290 0.0913395083 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_001876_040 0.0913732061 - - PREDICTED: mucin-5B [Jatropha curcas]
9 Hb_000260_460 0.0927537792 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
10 Hb_001301_270 0.0962516293 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
11 Hb_000676_070 0.0973041608 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
12 Hb_000136_140 0.0974331522 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
13 Hb_002473_050 0.0986622952 - - catalytic, putative [Ricinus communis]
14 Hb_079526_040 0.0991397295 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
15 Hb_000258_070 0.1000821884 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
16 Hb_000244_180 0.1004731829 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000061_180 0.1013280134 - - exonuclease, putative [Ricinus communis]
18 Hb_002495_080 0.1020481613 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
19 Hb_001269_330 0.1022050226 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
20 Hb_000703_190 0.1023773086 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001512_040 Hb_001512_040 Hb_000101_080 Hb_000101_080 Hb_001512_040--Hb_000101_080 Hb_032202_220 Hb_032202_220 Hb_001512_040--Hb_032202_220 Hb_019181_040 Hb_019181_040 Hb_001512_040--Hb_019181_040 Hb_004754_050 Hb_004754_050 Hb_001512_040--Hb_004754_050 Hb_002326_040 Hb_002326_040 Hb_001512_040--Hb_002326_040 Hb_000836_290 Hb_000836_290 Hb_001512_040--Hb_000836_290 Hb_000260_460 Hb_000260_460 Hb_000101_080--Hb_000260_460 Hb_000101_080--Hb_032202_220 Hb_000703_190 Hb_000703_190 Hb_000101_080--Hb_000703_190 Hb_079526_040 Hb_079526_040 Hb_000101_080--Hb_079526_040 Hb_000078_140 Hb_000078_140 Hb_000101_080--Hb_000078_140 Hb_001301_270 Hb_001301_270 Hb_032202_220--Hb_001301_270 Hb_032202_220--Hb_000078_140 Hb_001876_040 Hb_001876_040 Hb_032202_220--Hb_001876_040 Hb_002774_190 Hb_002774_190 Hb_032202_220--Hb_002774_190 Hb_001157_230 Hb_001157_230 Hb_032202_220--Hb_001157_230 Hb_000061_180 Hb_000061_180 Hb_032202_220--Hb_000061_180 Hb_000046_500 Hb_000046_500 Hb_019181_040--Hb_000046_500 Hb_000349_260 Hb_000349_260 Hb_019181_040--Hb_000349_260 Hb_000317_040 Hb_000317_040 Hb_019181_040--Hb_000317_040 Hb_019181_040--Hb_004754_050 Hb_019181_040--Hb_000703_190 Hb_001269_330 Hb_001269_330 Hb_019181_040--Hb_001269_330 Hb_007975_060 Hb_007975_060 Hb_004754_050--Hb_007975_060 Hb_002157_120 Hb_002157_120 Hb_004754_050--Hb_002157_120 Hb_133702_010 Hb_133702_010 Hb_004754_050--Hb_133702_010 Hb_001087_030 Hb_001087_030 Hb_004754_050--Hb_001087_030 Hb_000058_130 Hb_000058_130 Hb_004754_050--Hb_000058_130 Hb_000214_050 Hb_000214_050 Hb_002326_040--Hb_000214_050 Hb_012506_030 Hb_012506_030 Hb_002326_040--Hb_012506_030 Hb_002811_270 Hb_002811_270 Hb_002326_040--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_002326_040--Hb_001518_080 Hb_007248_030 Hb_007248_030 Hb_002326_040--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_002326_040--Hb_023313_040 Hb_004631_150 Hb_004631_150 Hb_000836_290--Hb_004631_150 Hb_000261_050 Hb_000261_050 Hb_000836_290--Hb_000261_050 Hb_171334_010 Hb_171334_010 Hb_000836_290--Hb_171334_010 Hb_000347_040 Hb_000347_040 Hb_000836_290--Hb_000347_040 Hb_000836_290--Hb_032202_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.57462 4.89848 9.54925 12.6909 9.16756 5.32834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19702 5.55358 7.04934 5.05981 11.1285

CAGE analysis