Hb_001301_270

Information

Type -
Description -
Location Contig1301: 184454-191951
Sequence    

Annotation

kegg
ID rcu:RCOM_0584640
description Heat-shock protein 105 kDa, putative (EC:1.3.1.74)
nr
ID XP_012070816.1
description PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
swissprot
ID Q9SAB1
description Heat shock 70 kDa protein 16 OS=Arabidopsis thaliana GN=HSP70-16 PE=2 SV=1
trembl
ID A0A067KVV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00880 PE=3 SV=1
Gene Ontology
ID GO:0005524
description heat shock 70 kda protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09038: 184425-184686 , PASA_asmbl_09039: 185209-191859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_270 0.0 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
2 Hb_032202_220 0.0584571604 - - ring finger protein, putative [Ricinus communis]
3 Hb_006970_020 0.0677749147 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
4 Hb_074197_040 0.0691061522 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
5 Hb_000078_140 0.0691106643 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
6 Hb_000815_300 0.0718799173 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_001329_250 0.073707367 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
8 Hb_000773_040 0.0762806068 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
9 Hb_011377_040 0.0768303315 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
10 Hb_001876_040 0.076989715 - - PREDICTED: mucin-5B [Jatropha curcas]
11 Hb_000703_190 0.0796936295 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
12 Hb_000139_080 0.0817812735 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
13 Hb_000270_190 0.0843043521 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
14 Hb_028487_070 0.0847249597 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001157_230 0.0848829849 - - Protein AFR, putative [Ricinus communis]
16 Hb_000635_090 0.0855534088 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
17 Hb_022250_010 0.0865247305 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
18 Hb_002027_080 0.0866113599 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
19 Hb_007545_010 0.0876213571 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
20 Hb_001440_020 0.0897145656 - - exocyst componenet sec8, putative [Ricinus communis]

Gene co-expression network

sample Hb_001301_270 Hb_001301_270 Hb_032202_220 Hb_032202_220 Hb_001301_270--Hb_032202_220 Hb_006970_020 Hb_006970_020 Hb_001301_270--Hb_006970_020 Hb_074197_040 Hb_074197_040 Hb_001301_270--Hb_074197_040 Hb_000078_140 Hb_000078_140 Hb_001301_270--Hb_000078_140 Hb_000815_300 Hb_000815_300 Hb_001301_270--Hb_000815_300 Hb_001329_250 Hb_001329_250 Hb_001301_270--Hb_001329_250 Hb_032202_220--Hb_000078_140 Hb_001876_040 Hb_001876_040 Hb_032202_220--Hb_001876_040 Hb_002774_190 Hb_002774_190 Hb_032202_220--Hb_002774_190 Hb_001157_230 Hb_001157_230 Hb_032202_220--Hb_001157_230 Hb_000061_180 Hb_000061_180 Hb_032202_220--Hb_000061_180 Hb_006970_020--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_074197_040--Hb_000078_140 Hb_074197_040--Hb_000815_300 Hb_074197_040--Hb_011377_040 Hb_065968_010 Hb_065968_010 Hb_074197_040--Hb_065968_010 Hb_074197_040--Hb_006970_020 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_003498_080 Hb_003498_080 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_004044_050 Hb_004044_050 Hb_001329_250--Hb_004044_050 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03954 7.09982 11.5121 13.0737 5.82807 6.8501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00653 4.90567 7.67451 6.43684 13.5829

CAGE analysis