Hb_032202_220

Information

Type -
Description -
Location Contig32202: 117298-119667
Sequence    

Annotation

kegg
ID rcu:RCOM_1613740
description ring finger protein, putative
nr
ID XP_002511792.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q9LSW9
description RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1
trembl
ID B9RDK3
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1613740 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl40-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34094: 117322-119434 , PASA_asmbl_34095: 119504-119693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_220 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_001301_270 0.0584571604 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
3 Hb_000078_140 0.0602803397 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
4 Hb_001876_040 0.0647016916 - - PREDICTED: mucin-5B [Jatropha curcas]
5 Hb_002774_190 0.0710356346 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
6 Hb_001157_230 0.0717342056 - - Protein AFR, putative [Ricinus communis]
7 Hb_000061_180 0.0739457202 - - exonuclease, putative [Ricinus communis]
8 Hb_001512_040 0.0742736194 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
9 Hb_000815_300 0.0750468248 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_000101_080 0.0754742736 - - PREDICTED: protein CREG1 [Jatropha curcas]
11 Hb_000703_190 0.0755770264 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
12 Hb_002027_080 0.0763237349 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
13 Hb_000139_080 0.0765139006 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
14 Hb_000212_120 0.0767083034 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
15 Hb_028487_070 0.0769767609 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006970_020 0.0805710956 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
17 Hb_002811_270 0.0806941545 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
18 Hb_000260_460 0.0814262192 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
19 Hb_000773_040 0.0820839231 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
20 Hb_011310_110 0.0828664145 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_032202_220 Hb_032202_220 Hb_001301_270 Hb_001301_270 Hb_032202_220--Hb_001301_270 Hb_000078_140 Hb_000078_140 Hb_032202_220--Hb_000078_140 Hb_001876_040 Hb_001876_040 Hb_032202_220--Hb_001876_040 Hb_002774_190 Hb_002774_190 Hb_032202_220--Hb_002774_190 Hb_001157_230 Hb_001157_230 Hb_032202_220--Hb_001157_230 Hb_000061_180 Hb_000061_180 Hb_032202_220--Hb_000061_180 Hb_006970_020 Hb_006970_020 Hb_001301_270--Hb_006970_020 Hb_074197_040 Hb_074197_040 Hb_001301_270--Hb_074197_040 Hb_001301_270--Hb_000078_140 Hb_000815_300 Hb_000815_300 Hb_001301_270--Hb_000815_300 Hb_001329_250 Hb_001329_250 Hb_001301_270--Hb_001329_250 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_000078_140--Hb_074197_040 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_000212_120 Hb_000212_120 Hb_001876_040--Hb_000212_120 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_134849_010 Hb_134849_010 Hb_002774_190--Hb_134849_010 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_002774_190--Hb_000061_180 Hb_001157_230--Hb_000212_120 Hb_001157_230--Hb_022250_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_000061_180--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_000061_180--Hb_000023_260 Hb_007975_060 Hb_007975_060 Hb_000061_180--Hb_007975_060 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_133702_010 Hb_133702_010 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50905 2.99005 5.71905 5.75644 3.2657 2.79508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51072 2.27285 2.89041 2.91816 6.12098

CAGE analysis