Hb_002774_190

Information

Type -
Description -
Location Contig2774: 166360-173828
Sequence    

Annotation

kegg
ID rcu:RCOM_1034540
description Endoplasmic reticulum-Golgi intermediate compartment protein, putative
nr
ID XP_002513896.1
description Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
swissprot
ID Q803I2
description Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1
trembl
ID B9RJH7
description Endoplasmic reticulum-Golgi intermediate compartment protein, putative OS=Ricinus communis GN=RCOM_1034540 PE=4 SV=1
Gene Ontology
ID GO:0005774
description endoplasmic reticulum-golgi intermediate compartment protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_190 0.0 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
2 Hb_000212_120 0.0517214934 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
3 Hb_028487_070 0.0683944436 - - conserved hypothetical protein [Ricinus communis]
4 Hb_032202_220 0.0710356346 - - ring finger protein, putative [Ricinus communis]
5 Hb_134849_010 0.0714306125 - - ATP synthase subunit d, putative [Ricinus communis]
6 Hb_000375_390 0.0720150862 - - poly-A binding protein, putative [Ricinus communis]
7 Hb_000061_180 0.0743509938 - - exonuclease, putative [Ricinus communis]
8 Hb_000078_140 0.0766391246 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
9 Hb_000237_200 0.0766852527 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
10 Hb_002027_080 0.0769100715 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
11 Hb_021374_030 0.0782672231 - - hypothetical protein RCOM_0351490 [Ricinus communis]
12 Hb_000300_470 0.0789181929 - - PREDICTED: nucleolin-like [Jatropha curcas]
13 Hb_002883_030 0.0790780296 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
14 Hb_012150_030 0.0797442399 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_001876_040 0.0805934366 - - PREDICTED: mucin-5B [Jatropha curcas]
16 Hb_001157_230 0.0807473971 - - Protein AFR, putative [Ricinus communis]
17 Hb_010863_050 0.0810132352 - - OTU domain-containing protein 6B, putative [Ricinus communis]
18 Hb_005260_030 0.0811200856 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
19 Hb_000212_440 0.0815019931 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_004096_240 0.0816998129 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]

Gene co-expression network

sample Hb_002774_190 Hb_002774_190 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_134849_010 Hb_134849_010 Hb_002774_190--Hb_134849_010 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180 Hb_001876_040 Hb_001876_040 Hb_000212_120--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_000212_120--Hb_001157_230 Hb_000212_120--Hb_032202_220 Hb_000212_120--Hb_000061_180 Hb_002883_030 Hb_002883_030 Hb_000212_120--Hb_002883_030 Hb_000645_280 Hb_000645_280 Hb_028487_070--Hb_000645_280 Hb_000078_140 Hb_000078_140 Hb_028487_070--Hb_000078_140 Hb_000139_080 Hb_000139_080 Hb_028487_070--Hb_000139_080 Hb_000815_300 Hb_000815_300 Hb_028487_070--Hb_000815_300 Hb_001141_240 Hb_001141_240 Hb_028487_070--Hb_001141_240 Hb_001301_270 Hb_001301_270 Hb_032202_220--Hb_001301_270 Hb_032202_220--Hb_000078_140 Hb_032202_220--Hb_001876_040 Hb_032202_220--Hb_001157_230 Hb_032202_220--Hb_000061_180 Hb_003053_110 Hb_003053_110 Hb_134849_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_134849_010--Hb_012150_030 Hb_000032_500 Hb_000032_500 Hb_134849_010--Hb_000032_500 Hb_033312_010 Hb_033312_010 Hb_134849_010--Hb_033312_010 Hb_048093_010 Hb_048093_010 Hb_134849_010--Hb_048093_010 Hb_000023_260 Hb_000023_260 Hb_000375_390--Hb_000023_260 Hb_000375_390--Hb_000061_180 Hb_000035_090 Hb_000035_090 Hb_000375_390--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_000061_180--Hb_000023_260 Hb_007975_060 Hb_007975_060 Hb_000061_180--Hb_007975_060 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_133702_010 Hb_133702_010 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.67874 5.75089 10.9011 10.5537 6.19041 6.5685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.48468 5.93603 3.8853 7.51662 14.8316

CAGE analysis