Hb_000645_280

Information

Type -
Description -
Location Contig645: 235005-244799
Sequence    

Annotation

kegg
ID tcc:TCM_021319
description Associated molecule with the SH3 domain of STAM 3 isoform 1
nr
ID XP_012084026.1
description PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
swissprot
ID Q5PNU3
description AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2
trembl
ID A0A067K7U0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18964 PE=4 SV=1
Gene Ontology
ID GO:0009987
description amsh-like ubiquitin thioesterase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_280 0.0 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
2 Hb_028487_070 0.0669874106 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000684_210 0.0751959554 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
4 Hb_002232_390 0.0807691525 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
5 Hb_001051_050 0.0844472797 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001347_060 0.0922255597 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_005800_030 0.0959029651 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
8 Hb_015675_040 0.0969317872 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
9 Hb_001876_040 0.0983422681 - - PREDICTED: mucin-5B [Jatropha curcas]
10 Hb_001301_270 0.0983920537 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
11 Hb_000061_180 0.0993629989 - - exonuclease, putative [Ricinus communis]
12 Hb_003053_110 0.1003107496 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
13 Hb_074197_040 0.100508233 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
14 Hb_001157_230 0.1006959276 - - Protein AFR, putative [Ricinus communis]
15 Hb_000212_120 0.1010888465 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
16 Hb_170138_010 0.1016080414 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008705_020 0.1018912097 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
18 Hb_003994_160 0.1021164299 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
19 Hb_002774_190 0.1024805178 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
20 Hb_000077_150 0.1024978852 - - PREDICTED: riboflavin synthase [Jatropha curcas]

Gene co-expression network

sample Hb_000645_280 Hb_000645_280 Hb_028487_070 Hb_028487_070 Hb_000645_280--Hb_028487_070 Hb_000684_210 Hb_000684_210 Hb_000645_280--Hb_000684_210 Hb_002232_390 Hb_002232_390 Hb_000645_280--Hb_002232_390 Hb_001051_050 Hb_001051_050 Hb_000645_280--Hb_001051_050 Hb_001347_060 Hb_001347_060 Hb_000645_280--Hb_001347_060 Hb_005800_030 Hb_005800_030 Hb_000645_280--Hb_005800_030 Hb_002774_190 Hb_002774_190 Hb_028487_070--Hb_002774_190 Hb_000078_140 Hb_000078_140 Hb_028487_070--Hb_000078_140 Hb_000139_080 Hb_000139_080 Hb_028487_070--Hb_000139_080 Hb_000815_300 Hb_000815_300 Hb_028487_070--Hb_000815_300 Hb_001141_240 Hb_001141_240 Hb_028487_070--Hb_001141_240 Hb_000359_210 Hb_000359_210 Hb_000684_210--Hb_000359_210 Hb_170138_010 Hb_170138_010 Hb_000684_210--Hb_170138_010 Hb_001662_100 Hb_001662_100 Hb_000684_210--Hb_001662_100 Hb_003106_190 Hb_003106_190 Hb_000684_210--Hb_003106_190 Hb_009569_040 Hb_009569_040 Hb_000684_210--Hb_009569_040 Hb_009178_060 Hb_009178_060 Hb_002232_390--Hb_009178_060 Hb_003475_020 Hb_003475_020 Hb_002232_390--Hb_003475_020 Hb_002232_390--Hb_000684_210 Hb_007763_070 Hb_007763_070 Hb_002232_390--Hb_007763_070 Hb_001449_070 Hb_001449_070 Hb_002232_390--Hb_001449_070 Hb_002928_090 Hb_002928_090 Hb_001051_050--Hb_002928_090 Hb_000014_040 Hb_000014_040 Hb_001051_050--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_001051_050--Hb_001242_120 Hb_000116_190 Hb_000116_190 Hb_001051_050--Hb_000116_190 Hb_007821_030 Hb_007821_030 Hb_001051_050--Hb_007821_030 Hb_000347_430 Hb_000347_430 Hb_001347_060--Hb_000347_430 Hb_008033_040 Hb_008033_040 Hb_001347_060--Hb_008033_040 Hb_004108_160 Hb_004108_160 Hb_001347_060--Hb_004108_160 Hb_001936_090 Hb_001936_090 Hb_001347_060--Hb_001936_090 Hb_000363_310 Hb_000363_310 Hb_001347_060--Hb_000363_310 Hb_000406_200 Hb_000406_200 Hb_001347_060--Hb_000406_200 Hb_133702_010 Hb_133702_010 Hb_005800_030--Hb_133702_010 Hb_004545_110 Hb_004545_110 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_004452_120 Hb_004452_120 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.782793 1.1586 1.79612 2.90835 1.34692 1.18032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.937463 1.79414 1.28148 1.31793 3.44343

CAGE analysis