Hb_007821_030

Information

Type -
Description -
Location Contig7821: 49990-62496
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19270g
description POPTRDRAFT_762975; 5' nucleotidase family protein
nr
ID KHG17868.1
description 5'-nucleotidase domain-containing [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NTP1
description 5'-nucleotidase domain-containing OS=Gossypium arboreum GN=F383_07236 PE=4 SV=1
Gene Ontology
ID GO:0008253
description had-superfamily subfamily 5 -nucleotidase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58007: 20623-52664 , PASA_asmbl_58009: 52675-62606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007821_030 0.0 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
2 Hb_002173_070 0.0810104276 - - MRG family protein isoform 2 [Theobroma cacao]
3 Hb_005288_130 0.0874591238 - - protein with unknown function [Ricinus communis]
4 Hb_001051_050 0.0900422054 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003878_150 0.0946114611 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
6 Hb_000035_260 0.0955613829 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
7 Hb_000061_180 0.1033277767 - - exonuclease, putative [Ricinus communis]
8 Hb_001269_130 0.1043929217 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
9 Hb_001242_120 0.1051898573 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
10 Hb_109000_020 0.1063743195 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
11 Hb_005976_080 0.1068584842 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
12 Hb_000116_190 0.1072830274 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012733_040 0.1073728979 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
14 Hb_000364_050 0.1102957078 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
15 Hb_041290_020 0.1111228986 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
16 Hb_065525_080 0.1111235919 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
17 Hb_002272_270 0.1112174301 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
18 Hb_000840_200 0.1117572899 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
19 Hb_000237_200 0.112922422 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
20 Hb_007741_110 0.1135389304 - - -

Gene co-expression network

sample Hb_007821_030 Hb_007821_030 Hb_002173_070 Hb_002173_070 Hb_007821_030--Hb_002173_070 Hb_005288_130 Hb_005288_130 Hb_007821_030--Hb_005288_130 Hb_001051_050 Hb_001051_050 Hb_007821_030--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_007821_030--Hb_003878_150 Hb_000035_260 Hb_000035_260 Hb_007821_030--Hb_000035_260 Hb_000061_180 Hb_000061_180 Hb_007821_030--Hb_000061_180 Hb_021374_030 Hb_021374_030 Hb_002173_070--Hb_021374_030 Hb_003098_070 Hb_003098_070 Hb_002173_070--Hb_003098_070 Hb_000364_050 Hb_000364_050 Hb_002173_070--Hb_000364_050 Hb_000749_010 Hb_000749_010 Hb_002173_070--Hb_000749_010 Hb_001269_130 Hb_001269_130 Hb_002173_070--Hb_001269_130 Hb_000398_060 Hb_000398_060 Hb_005288_130--Hb_000398_060 Hb_000116_490 Hb_000116_490 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_000840_200 Hb_000840_200 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_002928_090 Hb_002928_090 Hb_001051_050--Hb_002928_090 Hb_000014_040 Hb_000014_040 Hb_001051_050--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_001051_050--Hb_001242_120 Hb_000116_190 Hb_000116_190 Hb_001051_050--Hb_000116_190 Hb_000645_280 Hb_000645_280 Hb_001051_050--Hb_000645_280 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_005725_130 Hb_005725_130 Hb_003878_150--Hb_005725_130 Hb_001662_100 Hb_001662_100 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_001195_400 Hb_001195_400 Hb_003878_150--Hb_001195_400 Hb_000909_080 Hb_000909_080 Hb_000035_260--Hb_000909_080 Hb_000365_010 Hb_000365_010 Hb_000035_260--Hb_000365_010 Hb_001141_240 Hb_001141_240 Hb_000035_260--Hb_001141_240 Hb_000173_130 Hb_000173_130 Hb_000035_260--Hb_000173_130 Hb_000815_300 Hb_000815_300 Hb_000035_260--Hb_000815_300 Hb_000375_390 Hb_000375_390 Hb_000061_180--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_000061_180--Hb_000023_260 Hb_007975_060 Hb_007975_060 Hb_000061_180--Hb_007975_060 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_133702_010 Hb_133702_010 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74222 1.10646 4.08145 3.77019 1.5866 2.59052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30013 3.57815 1.6686 3.14186 4.32157

CAGE analysis