Hb_000116_490

Information

Type -
Description -
Location Contig116: 420001-424362
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09400g
description POPTRDRAFT_831139; transducin family protein
nr
ID XP_012088611.1
description PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
swissprot
ID B4N984
description WD repeat-containing protein 55 homolog OS=Drosophila willistoni GN=GK12179 PE=3 SV=1
trembl
ID A0A067JV54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27144 PE=4 SV=1
Gene Ontology
ID GO:0007275
description wd repeat-containing protein 55 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04892: 420093-424350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_490 0.0 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
2 Hb_001804_080 0.0730034998 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
3 Hb_005288_130 0.0780492358 - - protein with unknown function [Ricinus communis]
4 Hb_032202_100 0.0798692767 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
5 Hb_000946_090 0.0814443541 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
6 Hb_002303_020 0.0862028501 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
7 Hb_000270_310 0.088959313 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
8 Hb_000130_270 0.0899804847 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
9 Hb_000840_200 0.0918936916 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
10 Hb_004109_340 0.0934085052 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
11 Hb_000035_160 0.0943276881 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
12 Hb_004712_210 0.0954878726 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
13 Hb_005588_060 0.0961768461 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
14 Hb_111036_010 0.0969292349 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
15 Hb_163175_010 0.0971126556 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
16 Hb_005245_120 0.0972857427 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_004357_050 0.0991519149 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
18 Hb_000663_060 0.0992275477 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
19 Hb_000076_220 0.0993697933 - - thioredoxin domain-containing protein, putative [Ricinus communis]
20 Hb_000875_080 0.0994956073 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000116_490 Hb_000116_490 Hb_001804_080 Hb_001804_080 Hb_000116_490--Hb_001804_080 Hb_005288_130 Hb_005288_130 Hb_000116_490--Hb_005288_130 Hb_032202_100 Hb_032202_100 Hb_000116_490--Hb_032202_100 Hb_000946_090 Hb_000946_090 Hb_000116_490--Hb_000946_090 Hb_002303_020 Hb_002303_020 Hb_000116_490--Hb_002303_020 Hb_000270_310 Hb_000270_310 Hb_000116_490--Hb_000270_310 Hb_001804_080--Hb_000946_090 Hb_001804_080--Hb_032202_100 Hb_001804_080--Hb_000270_310 Hb_002307_180 Hb_002307_180 Hb_001804_080--Hb_002307_180 Hb_005245_120 Hb_005245_120 Hb_001804_080--Hb_005245_120 Hb_000398_060 Hb_000398_060 Hb_005288_130--Hb_000398_060 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_000840_200 Hb_000840_200 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_001931_010 Hb_001931_010 Hb_000946_090--Hb_001931_010 Hb_000419_020 Hb_000419_020 Hb_000946_090--Hb_000419_020 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_002968_040 Hb_002968_040 Hb_000946_090--Hb_002968_040 Hb_002303_020--Hb_000840_200 Hb_002534_100 Hb_002534_100 Hb_002303_020--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_002303_020--Hb_004712_210 Hb_001728_040 Hb_001728_040 Hb_002303_020--Hb_001728_040 Hb_044653_040 Hb_044653_040 Hb_002303_020--Hb_044653_040 Hb_015675_040 Hb_015675_040 Hb_002303_020--Hb_015675_040 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6946 9.89438 18.9977 16.8811 8.91495 7.31965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84587 23.3452 6.94726 15.9322 11.2332

CAGE analysis