Hb_005288_130

Information

Type -
Description -
Location Contig5288: 78815-83902
Sequence    

Annotation

kegg
ID rcu:RCOM_0609580
description protein with unknown function
nr
ID XP_002521986.1
description protein with unknown function [Ricinus communis]
swissprot
ID A2RV01
description Diphthine--ammonia ligase OS=Danio rerio GN=dph6 PE=2 SV=1
trembl
ID B9S7L7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47184: 78845-80385 , PASA_asmbl_47185: 80399-81127 , PASA_asmbl_47186: 81146-82679 , PASA_asmbl_47187: 83732-83861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_130 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000398_060 0.0675941936 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
3 Hb_000116_490 0.0780492358 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
4 Hb_163175_010 0.0789162093 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
5 Hb_000840_200 0.0800984581 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
6 Hb_065525_080 0.0803248716 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
7 Hb_000663_060 0.0805532101 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
8 Hb_002272_270 0.0811428655 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
9 Hb_000130_270 0.0835688146 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
10 Hb_000875_080 0.0846276247 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
11 Hb_007821_030 0.0874591238 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
12 Hb_008616_050 0.0877063915 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
13 Hb_002173_070 0.0883993821 - - MRG family protein isoform 2 [Theobroma cacao]
14 Hb_002439_010 0.0889714835 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
15 Hb_001269_130 0.0894665418 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
16 Hb_004357_050 0.0896616735 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
17 Hb_032202_100 0.0901891929 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
18 Hb_000076_220 0.0902318373 - - thioredoxin domain-containing protein, putative [Ricinus communis]
19 Hb_001472_100 0.0925864151 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
20 Hb_001821_110 0.0951979367 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005288_130 Hb_005288_130 Hb_000398_060 Hb_000398_060 Hb_005288_130--Hb_000398_060 Hb_000116_490 Hb_000116_490 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_000840_200 Hb_000840_200 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_002301_100 Hb_002301_100 Hb_000398_060--Hb_002301_100 Hb_000363_190 Hb_000363_190 Hb_000398_060--Hb_000363_190 Hb_001828_180 Hb_001828_180 Hb_000398_060--Hb_001828_180 Hb_012733_040 Hb_012733_040 Hb_000398_060--Hb_012733_040 Hb_001269_130 Hb_001269_130 Hb_000398_060--Hb_001269_130 Hb_001804_080 Hb_001804_080 Hb_000116_490--Hb_001804_080 Hb_032202_100 Hb_032202_100 Hb_000116_490--Hb_032202_100 Hb_000946_090 Hb_000946_090 Hb_000116_490--Hb_000946_090 Hb_002303_020 Hb_002303_020 Hb_000116_490--Hb_002303_020 Hb_000270_310 Hb_000270_310 Hb_000116_490--Hb_000270_310 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_015675_040 Hb_015675_040 Hb_000840_200--Hb_015675_040 Hb_093666_010 Hb_093666_010 Hb_065525_080--Hb_093666_010 Hb_001221_440 Hb_001221_440 Hb_065525_080--Hb_001221_440 Hb_113853_010 Hb_113853_010 Hb_065525_080--Hb_113853_010 Hb_001623_270 Hb_001623_270 Hb_065525_080--Hb_001623_270 Hb_000375_390 Hb_000375_390 Hb_065525_080--Hb_000375_390 Hb_065525_080--Hb_183433_010 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_000663_060--Hb_001269_130 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_000663_060--Hb_163175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95111 1.71334 5.02456 4.45711 2.35506 2.29256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57028 4.4687 1.61575 4.02616 3.83572

CAGE analysis