Hb_157023_020

Information

Type -
Description -
Location Contig157023: 3017-8510
Sequence    

Annotation

kegg
ID rcu:RCOM_1492510
description nucleic acid binding protein, putative
nr
ID XP_002516000.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9D8Z1
description Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus GN=Ascc1 PE=2 SV=1
trembl
ID B9RQI1
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1492510 PE=4 SV=1
Gene Ontology
ID GO:0003723
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13701: 3037-9166 , PASA_asmbl_13702: 3433-5605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157023_020 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000840_200 0.0710742243 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
3 Hb_002572_020 0.0757449436 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
4 Hb_073973_090 0.0807201981 - - Aminotransferase ybdL, putative [Ricinus communis]
5 Hb_000375_390 0.0819661258 - - poly-A binding protein, putative [Ricinus communis]
6 Hb_000023_260 0.0829135523 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
7 Hb_000603_160 0.0832898856 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
8 Hb_002272_270 0.0854614488 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
9 Hb_015675_040 0.0869588137 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
10 Hb_027472_140 0.0879904199 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
11 Hb_000699_150 0.0880759522 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
12 Hb_000035_160 0.0887652491 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
13 Hb_000035_090 0.0894864439 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
14 Hb_065525_080 0.089800709 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
15 Hb_062226_060 0.0923713482 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
16 Hb_004607_090 0.0937710157 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
17 Hb_002316_140 0.0947001679 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
18 Hb_003878_090 0.094830334 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
19 Hb_003994_160 0.0963705395 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
20 Hb_000061_180 0.0964538896 - - exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_157023_020 Hb_157023_020 Hb_000840_200 Hb_000840_200 Hb_157023_020--Hb_000840_200 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_073973_090 Hb_073973_090 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_000603_160 Hb_000603_160 Hb_157023_020--Hb_000603_160 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_015675_040 Hb_015675_040 Hb_000840_200--Hb_015675_040 Hb_002572_020--Hb_000603_160 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_002413_010 Hb_002413_010 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_000173_310 Hb_000173_310 Hb_002572_020--Hb_000173_310 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_000375_390--Hb_000023_260 Hb_000061_180 Hb_000061_180 Hb_000375_390--Hb_000061_180 Hb_000375_390--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_000023_260--Hb_000061_180 Hb_000212_230 Hb_000212_230 Hb_000023_260--Hb_000212_230 Hb_001314_080 Hb_001314_080 Hb_000023_260--Hb_001314_080 Hb_133702_010 Hb_133702_010 Hb_000023_260--Hb_133702_010 Hb_007975_060 Hb_007975_060 Hb_000023_260--Hb_007975_060 Hb_005563_070 Hb_005563_070 Hb_000603_160--Hb_005563_070 Hb_189216_010 Hb_189216_010 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_001141_420 Hb_001141_420 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.103 33.1761 46.2395 50.3453 20.9758 25.9289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.8011 47.5927 17.0189 25.5658 52.0823

CAGE analysis