Hb_001314_080

Information

Type -
Description -
Location Contig1314: 236342-239751
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14330g
description hypothetical protein
nr
ID XP_006372208.1
description hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
swissprot
ID P21885
description Arginine decarboxylase OS=Bacillus subtilis (strain 168) GN=speA PE=1 SV=2
trembl
ID U5FGE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s14330g PE=4 SV=1
Gene Ontology
ID GO:0003824
description arginine decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09177: 236360-239738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_080 0.0 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
2 Hb_010883_040 0.068568748 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
3 Hb_000023_260 0.0750825702 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
4 Hb_015934_120 0.0827040379 - - PREDICTED: callose synthase 7 [Vitis vinifera]
5 Hb_001504_030 0.088684399 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
6 Hb_000212_230 0.0913020574 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
7 Hb_000665_130 0.0944872503 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
8 Hb_005405_020 0.0945677555 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
9 Hb_133702_010 0.0948033265 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000282_080 0.0950331409 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001369_750 0.0956496777 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
12 Hb_003153_010 0.0972974895 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
13 Hb_001226_140 0.0978202427 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
14 Hb_000768_200 0.0979166255 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
15 Hb_002496_020 0.0993847265 - - DNA binding protein, putative [Ricinus communis]
16 Hb_007975_060 0.1006117353 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
17 Hb_008421_020 0.1010072822 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
18 Hb_000193_330 0.1018577144 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
19 Hb_004531_140 0.1024583715 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
20 Hb_012150_030 0.1027891866 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001314_080 Hb_001314_080 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_000023_260 Hb_000023_260 Hb_001314_080--Hb_000023_260 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_001314_080--Hb_001504_030 Hb_000212_230 Hb_000212_230 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130 Hb_015941_020 Hb_015941_020 Hb_010883_040--Hb_015941_020 Hb_002496_020 Hb_002496_020 Hb_010883_040--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_010883_040--Hb_000335_030 Hb_001369_750 Hb_001369_750 Hb_010883_040--Hb_001369_750 Hb_002276_020 Hb_002276_020 Hb_010883_040--Hb_002276_020 Hb_000375_390 Hb_000375_390 Hb_000023_260--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_000023_260--Hb_000061_180 Hb_000023_260--Hb_000212_230 Hb_133702_010 Hb_133702_010 Hb_000023_260--Hb_133702_010 Hb_007975_060 Hb_007975_060 Hb_000023_260--Hb_007975_060 Hb_006683_070 Hb_006683_070 Hb_015934_120--Hb_006683_070 Hb_185255_010 Hb_185255_010 Hb_015934_120--Hb_185255_010 Hb_005144_050 Hb_005144_050 Hb_015934_120--Hb_005144_050 Hb_005800_030 Hb_005800_030 Hb_015934_120--Hb_005800_030 Hb_000172_440 Hb_000172_440 Hb_015934_120--Hb_000172_440 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_001504_030--Hb_133702_010 Hb_000721_030 Hb_000721_030 Hb_001504_030--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_001504_030--Hb_001102_020 Hb_003581_200 Hb_003581_200 Hb_000212_230--Hb_003581_200 Hb_000016_210 Hb_000016_210 Hb_000212_230--Hb_000016_210 Hb_005588_080 Hb_005588_080 Hb_000212_230--Hb_005588_080 Hb_006913_020 Hb_006913_020 Hb_000212_230--Hb_006913_020 Hb_010863_050 Hb_010863_050 Hb_000212_230--Hb_010863_050 Hb_000521_250 Hb_000521_250 Hb_000212_230--Hb_000521_250 Hb_000665_130--Hb_002276_020 Hb_000186_050 Hb_000186_050 Hb_000665_130--Hb_000186_050 Hb_000665_130--Hb_001369_750 Hb_011316_090 Hb_011316_090 Hb_000665_130--Hb_011316_090 Hb_005736_020 Hb_005736_020 Hb_000665_130--Hb_005736_020 Hb_007508_060 Hb_007508_060 Hb_000665_130--Hb_007508_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.0101 4.89627 6.44039 8.70662 4.47125 5.36908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.20377 5.69764 5.97795 3.57385 13.5801

CAGE analysis