Hb_011316_090

Information

Type -
Description -
Location Contig11316: 40352-48323
Sequence    

Annotation

kegg
ID zma:103648418
description uncharacterized LOC103648418
nr
ID CAE05990.1
description OSJNBa0004L19.22 [Oryza sativa Japonica Group]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID Q5JPZ2
description OSJNBa0004L19.22 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0004L19.22 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03946: 43468-43734 , PASA_asmbl_03947: 46570-47126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_090 0.0 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
2 Hb_002276_020 0.0750395165 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
3 Hb_000665_130 0.0886213336 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
4 Hb_001951_180 0.0959139898 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000261_060 0.1038173392 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
6 Hb_001369_750 0.1040546492 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
7 Hb_000281_090 0.1194425734 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
8 Hb_015941_020 0.1196558672 - - -
9 Hb_004899_260 0.1197734446 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
10 Hb_001671_010 0.1204247101 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
11 Hb_003929_110 0.1204622554 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001259_020 0.1223667602 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
13 Hb_035755_010 0.1225398869 - - unknown [Populus trichocarpa]
14 Hb_001123_260 0.1232566957 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
15 Hb_010883_040 0.1233248468 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
16 Hb_007922_020 0.1239113424 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
17 Hb_095595_010 0.1255566315 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
18 Hb_021443_040 0.1266505763 - - acc synthase, putative [Ricinus communis]
19 Hb_011344_160 0.1267552048 - - PREDICTED: primary amine oxidase [Jatropha curcas]
20 Hb_005736_020 0.1268298715 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]

Gene co-expression network

sample Hb_011316_090 Hb_011316_090 Hb_002276_020 Hb_002276_020 Hb_011316_090--Hb_002276_020 Hb_000665_130 Hb_000665_130 Hb_011316_090--Hb_000665_130 Hb_001951_180 Hb_001951_180 Hb_011316_090--Hb_001951_180 Hb_000261_060 Hb_000261_060 Hb_011316_090--Hb_000261_060 Hb_001369_750 Hb_001369_750 Hb_011316_090--Hb_001369_750 Hb_000281_090 Hb_000281_090 Hb_011316_090--Hb_000281_090 Hb_002276_020--Hb_000665_130 Hb_002276_020--Hb_001369_750 Hb_002276_020--Hb_001951_180 Hb_002276_020--Hb_000261_060 Hb_010883_040 Hb_010883_040 Hb_002276_020--Hb_010883_040 Hb_000186_050 Hb_000186_050 Hb_000665_130--Hb_000186_050 Hb_000665_130--Hb_001369_750 Hb_005736_020 Hb_005736_020 Hb_000665_130--Hb_005736_020 Hb_007508_060 Hb_007508_060 Hb_000665_130--Hb_007508_060 Hb_036790_080 Hb_036790_080 Hb_001951_180--Hb_036790_080 Hb_005253_030 Hb_005253_030 Hb_001951_180--Hb_005253_030 Hb_001951_180--Hb_000261_060 Hb_153533_010 Hb_153533_010 Hb_001951_180--Hb_153533_010 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_000261_060--Hb_036790_080 Hb_000261_060--Hb_001369_750 Hb_000261_060--Hb_005253_030 Hb_001008_120 Hb_001008_120 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_001205_230 Hb_001205_230 Hb_000281_090--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_000281_090--Hb_027346_010 Hb_007943_110 Hb_007943_110 Hb_000281_090--Hb_007943_110 Hb_000281_090--Hb_001008_120 Hb_001004_060 Hb_001004_060 Hb_000281_090--Hb_001004_060 Hb_004162_090 Hb_004162_090 Hb_000281_090--Hb_004162_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.44444 0.274052 0.121496 0.251335 0.234323 0.346307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389374 0.266466 0.256549 0.200347 0.672854

CAGE analysis