Hb_001951_180

Information

Type -
Description -
Location Contig1951: 164364-172631
Sequence    

Annotation

kegg
ID rcu:RCOM_0634390
description Carboxyl-terminal-processing protease precursor, putative (EC:3.4.21.102)
nr
ID XP_012091901.1
description PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID F4KHG6
description Carboxyl-terminal-processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=CTPA1 PE=1 SV=1
trembl
ID A0A067JNY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21675 PE=4 SV=1
Gene Ontology
ID GO:0005515
description carboxyl-terminal-processing protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19495: 164997-165970 , PASA_asmbl_19496: 165971-167687 , PASA_asmbl_19499: 171274-172388 , PASA_asmbl_19500: 171783-172343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_180 0.0 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_002276_020 0.0826194562 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
3 Hb_036790_080 0.094909099 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
4 Hb_011316_090 0.0959139898 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
5 Hb_005253_030 0.097578981 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000261_060 0.1086221991 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
7 Hb_153533_010 0.1121136713 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
8 Hb_001369_750 0.1136988938 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
9 Hb_035755_010 0.1139997872 - - unknown [Populus trichocarpa]
10 Hb_015941_020 0.1160708906 - - -
11 Hb_001435_030 0.1183941532 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
12 Hb_000665_130 0.1187525017 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
13 Hb_000087_140 0.1202273605 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
14 Hb_002496_020 0.1205344637 - - DNA binding protein, putative [Ricinus communis]
15 Hb_006117_040 0.1205610881 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
16 Hb_010883_040 0.1216093742 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
17 Hb_000224_160 0.1225536479 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_000130_320 0.1235980616 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
19 Hb_007922_020 0.1246334621 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
20 Hb_032920_050 0.1259193892 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001951_180 Hb_001951_180 Hb_002276_020 Hb_002276_020 Hb_001951_180--Hb_002276_020 Hb_036790_080 Hb_036790_080 Hb_001951_180--Hb_036790_080 Hb_011316_090 Hb_011316_090 Hb_001951_180--Hb_011316_090 Hb_005253_030 Hb_005253_030 Hb_001951_180--Hb_005253_030 Hb_000261_060 Hb_000261_060 Hb_001951_180--Hb_000261_060 Hb_153533_010 Hb_153533_010 Hb_001951_180--Hb_153533_010 Hb_000665_130 Hb_000665_130 Hb_002276_020--Hb_000665_130 Hb_002276_020--Hb_011316_090 Hb_001369_750 Hb_001369_750 Hb_002276_020--Hb_001369_750 Hb_002276_020--Hb_000261_060 Hb_010883_040 Hb_010883_040 Hb_002276_020--Hb_010883_040 Hb_036790_080--Hb_005253_030 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_001435_030 Hb_001435_030 Hb_036790_080--Hb_001435_030 Hb_011316_090--Hb_000665_130 Hb_011316_090--Hb_000261_060 Hb_011316_090--Hb_001369_750 Hb_000281_090 Hb_000281_090 Hb_011316_090--Hb_000281_090 Hb_001008_120 Hb_001008_120 Hb_005253_030--Hb_001008_120 Hb_005253_030--Hb_000261_060 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_002758_010 Hb_002758_010 Hb_005253_030--Hb_002758_010 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_000261_060--Hb_001369_750 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_000193_270 Hb_000193_270 Hb_153533_010--Hb_000193_270 Hb_004994_380 Hb_004994_380 Hb_153533_010--Hb_004994_380 Hb_003663_060 Hb_003663_060 Hb_153533_010--Hb_003663_060 Hb_035755_010 Hb_035755_010 Hb_153533_010--Hb_035755_010 Hb_004218_280 Hb_004218_280 Hb_153533_010--Hb_004218_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27351 0.719755 0.738269 0.660981 0.958138 1.4877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88241 1.00817 0.938246 0.921124 3.00107

CAGE analysis