Hb_004218_280

Information

Type -
Description -
Location Contig4218: 268224-274852
Sequence    

Annotation

kegg
ID rcu:RCOM_1452470
description Exoenzymes regulatory protein aepA precursor, putative
nr
ID XP_002513056.1
description Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
swissprot
ID O34355
description Putative amidohydrolase YtcJ OS=Bacillus subtilis (strain 168) GN=ytcJ PE=4 SV=1
trembl
ID B9RGA4
description Exoenzymes regulatory protein aepA, putative OS=Ricinus communis GN=RCOM_1452470 PE=4 SV=1
Gene Ontology
ID GO:0005783
description exoenzymes regulatory protein aepa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41711: 268526-274676 , PASA_asmbl_41712: 269852-274676 , PASA_asmbl_41713: 268191-269670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_280 0.0 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
2 Hb_000740_050 0.059367651 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
3 Hb_007441_130 0.0843925027 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_003462_070 0.0899320385 - - arsenical pump-driving atpase, putative [Ricinus communis]
5 Hb_000076_130 0.0933324103 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
6 Hb_007919_100 0.0950805062 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
7 Hb_003438_050 0.095281288 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
8 Hb_003440_060 0.0975022884 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
9 Hb_000948_170 0.0982478831 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
10 Hb_000346_060 0.0993873772 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
11 Hb_031284_070 0.1002795192 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
12 Hb_000627_250 0.1005110694 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
13 Hb_023278_010 0.1008832614 - - Chaperone protein DnaJ [Glycine soja]
14 Hb_000015_100 0.1009724726 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_006909_070 0.1022368867 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_021346_030 0.1023441271 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
17 Hb_001205_300 0.1025370361 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
18 Hb_003010_020 0.1026936963 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000797_040 0.1027483506 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
20 Hb_004994_380 0.1046271717 - - hypothetical protein JCGZ_14410 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_280 Hb_004218_280 Hb_000740_050 Hb_000740_050 Hb_004218_280--Hb_000740_050 Hb_007441_130 Hb_007441_130 Hb_004218_280--Hb_007441_130 Hb_003462_070 Hb_003462_070 Hb_004218_280--Hb_003462_070 Hb_000076_130 Hb_000076_130 Hb_004218_280--Hb_000076_130 Hb_007919_100 Hb_007919_100 Hb_004218_280--Hb_007919_100 Hb_003438_050 Hb_003438_050 Hb_004218_280--Hb_003438_050 Hb_000740_050--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_000740_050--Hb_031284_070 Hb_001205_300 Hb_001205_300 Hb_000740_050--Hb_001205_300 Hb_000797_040 Hb_000797_040 Hb_000740_050--Hb_000797_040 Hb_003440_060 Hb_003440_060 Hb_000740_050--Hb_003440_060 Hb_000044_040 Hb_000044_040 Hb_007441_130--Hb_000044_040 Hb_000008_290 Hb_000008_290 Hb_007441_130--Hb_000008_290 Hb_023480_010 Hb_023480_010 Hb_007441_130--Hb_023480_010 Hb_004097_070 Hb_004097_070 Hb_007441_130--Hb_004097_070 Hb_007062_020 Hb_007062_020 Hb_007441_130--Hb_007062_020 Hb_006909_070 Hb_006909_070 Hb_007441_130--Hb_006909_070 Hb_003462_070--Hb_001205_300 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000920_030 Hb_000920_030 Hb_003462_070--Hb_000920_030 Hb_009225_020 Hb_009225_020 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_000665_160 Hb_000665_160 Hb_000076_130--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_000076_130--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_032050_040 Hb_032050_040 Hb_007919_100--Hb_032050_040 Hb_152202_010 Hb_152202_010 Hb_007919_100--Hb_152202_010 Hb_002947_030 Hb_002947_030 Hb_007919_100--Hb_002947_030 Hb_007919_100--Hb_006909_070 Hb_002273_120 Hb_002273_120 Hb_007919_100--Hb_002273_120 Hb_000300_050 Hb_000300_050 Hb_007919_100--Hb_000300_050 Hb_003025_110 Hb_003025_110 Hb_003438_050--Hb_003025_110 Hb_000638_120 Hb_000638_120 Hb_003438_050--Hb_000638_120 Hb_007632_240 Hb_007632_240 Hb_003438_050--Hb_007632_240 Hb_001040_100 Hb_001040_100 Hb_003438_050--Hb_001040_100 Hb_003438_050--Hb_023480_010 Hb_003010_020 Hb_003010_020 Hb_003438_050--Hb_003010_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3713 5.36776 8.2181 8.2801 9.73398 13.8176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1886 5.08183 4.39494 7.33628 15.2992

CAGE analysis