Hb_031284_070

Information

Type -
Description -
Location Contig31284: 129691-134905
Sequence    

Annotation

kegg
ID rcu:RCOM_0443750
description translation initiation factor if-3, putative
nr
ID XP_012071539.1
description PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
swissprot
ID B2IY66
description Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1
trembl
ID A0A067KUU8
description Translation initiation factor IF-3 OS=Jatropha curcas GN=JCGZ_04056 PE=3 SV=1
Gene Ontology
ID GO:0009507
description translation initiation factor if- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33125: 130024-134816 , PASA_asmbl_33127: 130639-134818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031284_070 0.0 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
2 Hb_000948_170 0.0685447661 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
3 Hb_000627_250 0.0781640612 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
4 Hb_021346_030 0.0800661208 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
5 Hb_001660_120 0.0847721682 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
6 Hb_000740_050 0.0852988795 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
7 Hb_001205_300 0.0864331724 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
8 Hb_003462_070 0.0864858351 - - arsenical pump-driving atpase, putative [Ricinus communis]
9 Hb_000015_100 0.0888636321 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_000221_140 0.092160893 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_008206_060 0.095613323 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001662_140 0.0961892753 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
13 Hb_004218_280 0.1002795192 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
14 Hb_009252_040 0.1030000035 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
15 Hb_000331_130 0.103272265 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
16 Hb_000920_030 0.1058242786 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_013405_080 0.1073159751 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
18 Hb_029695_110 0.1095179786 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
19 Hb_006538_120 0.1101218834 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
20 Hb_009225_020 0.1142058548 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]

Gene co-expression network

sample Hb_031284_070 Hb_031284_070 Hb_000948_170 Hb_000948_170 Hb_031284_070--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_031284_070--Hb_000627_250 Hb_021346_030 Hb_021346_030 Hb_031284_070--Hb_021346_030 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_000740_050 Hb_000740_050 Hb_031284_070--Hb_000740_050 Hb_001205_300 Hb_001205_300 Hb_031284_070--Hb_001205_300 Hb_000015_100 Hb_000015_100 Hb_000948_170--Hb_000015_100 Hb_000948_170--Hb_021346_030 Hb_000948_170--Hb_000627_250 Hb_000948_170--Hb_001205_300 Hb_000816_100 Hb_000816_100 Hb_000948_170--Hb_000816_100 Hb_000627_250--Hb_021346_030 Hb_000627_250--Hb_000015_100 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_025557_050 Hb_025557_050 Hb_000627_250--Hb_025557_050 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_021346_030--Hb_000816_100 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_000331_130 Hb_000331_130 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_004218_280 Hb_004218_280 Hb_000740_050--Hb_004218_280 Hb_003462_070 Hb_003462_070 Hb_000740_050--Hb_003462_070 Hb_000740_050--Hb_001205_300 Hb_000797_040 Hb_000797_040 Hb_000740_050--Hb_000797_040 Hb_003440_060 Hb_003440_060 Hb_000740_050--Hb_003440_060 Hb_001205_300--Hb_003462_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3662 9.53781 20.5681 9.12165 12.4094 22.2246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9342 9.2664 6.73889 9.73762 33.8924

CAGE analysis