Hb_003462_070

Information

Type -
Description -
Location Contig3462: 82375-87510
Sequence    

Annotation

kegg
ID rcu:RCOM_0481370
description arsenical pump-driving atpase, putative (EC:3.6.3.16)
nr
ID XP_002530933.1
description arsenical pump-driving atpase, putative [Ricinus communis]
swissprot
ID O27555
description Putative arsenical pump-driving ATPase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1511 PE=1 SV=1
trembl
ID B9SY64
description Arsenical pump-driving atpase, putative OS=Ricinus communis GN=RCOM_0481370 PE=4 SV=1
Gene Ontology
ID GO:0016887
description atpase asna1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36112: 82583-85587 , PASA_asmbl_36113: 85596-87479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_070 0.0 - - arsenical pump-driving atpase, putative [Ricinus communis]
2 Hb_001205_300 0.0639538618 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
3 Hb_000061_020 0.0653356846 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
4 Hb_000920_030 0.0753338071 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_000740_050 0.0753947149 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
6 Hb_009225_020 0.0770397768 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
7 Hb_021943_080 0.0811314001 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
8 Hb_025557_050 0.0858910845 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
9 Hb_031284_070 0.0864858351 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
10 Hb_004218_280 0.0899320385 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
11 Hb_003728_100 0.0899330017 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
12 Hb_001660_120 0.0908985665 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
13 Hb_000445_140 0.0942610046 - - hypothetical protein RCOM_0561550 [Ricinus communis]
14 Hb_004096_240 0.094420324 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
15 Hb_001158_160 0.0962877035 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
16 Hb_005405_020 0.0964915563 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
17 Hb_002304_060 0.0979470809 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
18 Hb_000221_140 0.0988968068 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_000723_100 0.1000068542 - - phosphoglycerate kinase, putative [Ricinus communis]
20 Hb_000948_170 0.1003156041 - - hypothetical protein JCGZ_06749 [Jatropha curcas]

Gene co-expression network

sample Hb_003462_070 Hb_003462_070 Hb_001205_300 Hb_001205_300 Hb_003462_070--Hb_001205_300 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000920_030 Hb_000920_030 Hb_003462_070--Hb_000920_030 Hb_000740_050 Hb_000740_050 Hb_003462_070--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_003462_070--Hb_009225_020 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_001205_300--Hb_000740_050 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_025557_050 Hb_025557_050 Hb_000061_020--Hb_025557_050 Hb_000061_020--Hb_021943_080 Hb_000723_100 Hb_000723_100 Hb_000061_020--Hb_000723_100 Hb_002304_060 Hb_002304_060 Hb_000061_020--Hb_002304_060 Hb_017151_010 Hb_017151_010 Hb_000061_020--Hb_017151_010 Hb_029695_110 Hb_029695_110 Hb_000920_030--Hb_029695_110 Hb_000920_030--Hb_001205_300 Hb_006538_120 Hb_006538_120 Hb_000920_030--Hb_006538_120 Hb_003728_100 Hb_003728_100 Hb_000920_030--Hb_003728_100 Hb_000441_060 Hb_000441_060 Hb_000920_030--Hb_000441_060 Hb_004218_280 Hb_004218_280 Hb_000740_050--Hb_004218_280 Hb_000740_050--Hb_031284_070 Hb_000797_040 Hb_000797_040 Hb_000740_050--Hb_000797_040 Hb_003440_060 Hb_003440_060 Hb_000740_050--Hb_003440_060 Hb_009225_020--Hb_003728_100 Hb_000207_300 Hb_000207_300 Hb_009225_020--Hb_000207_300 Hb_005405_020 Hb_005405_020 Hb_009225_020--Hb_005405_020 Hb_000221_140 Hb_000221_140 Hb_009225_020--Hb_000221_140 Hb_001158_160 Hb_001158_160 Hb_021943_080--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_021943_080--Hb_000120_210 Hb_001089_070 Hb_001089_070 Hb_021943_080--Hb_001089_070 Hb_016777_040 Hb_016777_040 Hb_021943_080--Hb_016777_040 Hb_004096_240 Hb_004096_240 Hb_021943_080--Hb_004096_240 Hb_077026_010 Hb_077026_010 Hb_021943_080--Hb_077026_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95003 3.82538 10.5502 6.4931 6.91597 7.95369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93806 3.79917 2.90003 4.59465 11.7587

CAGE analysis