Hb_000723_100

Information

Type -
Description -
Location Contig723: 110224-117850
Sequence    

Annotation

kegg
ID rcu:RCOM_1355230
description phosphoglycerate kinase, putative (EC:2.7.2.3)
nr
ID XP_002519506.1
description phosphoglycerate kinase, putative [Ricinus communis]
swissprot
ID B8E2D3
description Phosphoglycerate kinase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pgk PE=3 SV=1
trembl
ID B9S0I7
description Phosphoglycerate kinase OS=Ricinus communis GN=RCOM_1355230 PE=3 SV=1
Gene Ontology
ID GO:0004618
description phosphoglycerate cytosolic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55756: 110340-117861 , PASA_asmbl_55757: 112478-116894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_100 0.0 - - phosphoglycerate kinase, putative [Ricinus communis]
2 Hb_003440_060 0.0736846612 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
3 Hb_002893_070 0.0827801666 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
4 Hb_004310_140 0.0891768589 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000665_160 0.0920130915 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
6 Hb_000740_050 0.0942542861 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
7 Hb_000061_020 0.0971719314 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
8 Hb_008642_040 0.0973660208 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
9 Hb_025557_050 0.0986445979 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
10 Hb_003462_070 0.1000068542 - - arsenical pump-driving atpase, putative [Ricinus communis]
11 Hb_001123_260 0.1012111327 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
12 Hb_029695_110 0.1044972366 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
13 Hb_012395_230 0.1048539294 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_000834_200 0.1056929327 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
15 Hb_000080_120 0.1064231255 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
16 Hb_004218_280 0.1065314326 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
17 Hb_004032_410 0.1066121413 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
18 Hb_002338_020 0.1090403589 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
19 Hb_003029_070 0.1118783936 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000227_170 0.1131824332 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000723_100 Hb_000723_100 Hb_003440_060 Hb_003440_060 Hb_000723_100--Hb_003440_060 Hb_002893_070 Hb_002893_070 Hb_000723_100--Hb_002893_070 Hb_004310_140 Hb_004310_140 Hb_000723_100--Hb_004310_140 Hb_000665_160 Hb_000665_160 Hb_000723_100--Hb_000665_160 Hb_000740_050 Hb_000740_050 Hb_000723_100--Hb_000740_050 Hb_000061_020 Hb_000061_020 Hb_000723_100--Hb_000061_020 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050 Hb_000080_120 Hb_000080_120 Hb_002893_070--Hb_000080_120 Hb_022693_140 Hb_022693_140 Hb_002893_070--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_002893_070--Hb_000224_160 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_000797_040 Hb_000797_040 Hb_004310_140--Hb_000797_040 Hb_002205_030 Hb_002205_030 Hb_004310_140--Hb_002205_030 Hb_003038_200 Hb_003038_200 Hb_004310_140--Hb_003038_200 Hb_002592_060 Hb_002592_060 Hb_004310_140--Hb_002592_060 Hb_000174_170 Hb_000174_170 Hb_004310_140--Hb_000174_170 Hb_000076_130 Hb_000076_130 Hb_000665_160--Hb_000076_130 Hb_000544_010 Hb_000544_010 Hb_000665_160--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000665_160--Hb_002909_050 Hb_000107_400 Hb_000107_400 Hb_000665_160--Hb_000107_400 Hb_007007_060 Hb_007007_060 Hb_000665_160--Hb_007007_060 Hb_000665_160--Hb_002893_070 Hb_004218_280 Hb_004218_280 Hb_000740_050--Hb_004218_280 Hb_003462_070 Hb_003462_070 Hb_000740_050--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_000740_050--Hb_031284_070 Hb_001205_300 Hb_001205_300 Hb_000740_050--Hb_001205_300 Hb_000740_050--Hb_000797_040 Hb_000740_050--Hb_003440_060 Hb_000061_020--Hb_003462_070 Hb_025557_050 Hb_025557_050 Hb_000061_020--Hb_025557_050 Hb_021943_080 Hb_021943_080 Hb_000061_020--Hb_021943_080 Hb_002304_060 Hb_002304_060 Hb_000061_020--Hb_002304_060 Hb_017151_010 Hb_017151_010 Hb_000061_020--Hb_017151_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.76331 3.93323 6.74545 3.98043 7.95492 5.8451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53834 4.8378 2.36455 3.47458 8.66754

CAGE analysis