Hb_000224_160

Information

Type -
Description -
Location Contig224: 104879-110511
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10990g
description phenylalanyl-tRNA synthetase class IIc family protein
nr
ID XP_012080671.1
description PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q94K73
description Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=2 SV=1
trembl
ID A0A067KF07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13778 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phenylalanine--trna chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23303: 107386-110499
cDNA
(Sanger)
(ID:Location)		 018_L13.ab1: 108953-110334 , 025_E19.ab1: 108678-110334

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_160 0.0 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_001584_200 0.0626317353 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
3 Hb_012022_150 0.0635695426 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
4 Hb_022693_140 0.0684428492 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
5 Hb_011716_130 0.0770046278 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
6 Hb_002163_040 0.0781759629 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000184_170 0.0793333196 - - hypothetical protein RCOM_1213430 [Ricinus communis]
8 Hb_000200_030 0.0801093832 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
9 Hb_002374_240 0.0805414711 - - nucellin, putative [Ricinus communis]
10 Hb_002893_070 0.0806578892 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
11 Hb_005405_020 0.0819042003 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
12 Hb_000080_120 0.0821124262 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
13 Hb_036790_080 0.0844885614 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
14 Hb_003376_230 0.0852858625 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
15 Hb_003939_050 0.087456101 - - protein with unknown function [Ricinus communis]
16 Hb_000181_240 0.0877262148 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
17 Hb_021346_030 0.0892047065 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
18 Hb_002496_020 0.0893062731 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001322_140 0.0897938465 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
20 Hb_000804_040 0.0920871323 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000224_160 Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_000224_160--Hb_001584_200 Hb_012022_150 Hb_012022_150 Hb_000224_160--Hb_012022_150 Hb_022693_140 Hb_022693_140 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170 Hb_003376_230 Hb_003376_230 Hb_001584_200--Hb_003376_230 Hb_000462_090 Hb_000462_090 Hb_001584_200--Hb_000462_090 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_000172_580 Hb_000172_580 Hb_001584_200--Hb_000172_580 Hb_012022_150--Hb_022693_140 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_022693_140--Hb_000804_040 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_005847_060 Hb_005847_060 Hb_011716_130--Hb_005847_060 Hb_002811_130 Hb_002811_130 Hb_011716_130--Hb_002811_130 Hb_000815_070 Hb_000815_070 Hb_011716_130--Hb_000815_070 Hb_002600_090 Hb_002600_090 Hb_011716_130--Hb_002600_090 Hb_011716_130--Hb_012022_150 Hb_000080_120 Hb_000080_120 Hb_002163_040--Hb_000080_120 Hb_006117_040 Hb_006117_040 Hb_002163_040--Hb_006117_040 Hb_002163_040--Hb_001584_200 Hb_002163_040--Hb_022693_140 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_001700_010 Hb_001700_010 Hb_000184_170--Hb_001700_010 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.833 8.32336 23.2812 13.2524 20.2262 25.6289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0426 19.718 19.9073 13.4122 36.1195

CAGE analysis