Hb_006117_040

Information

Type -
Description -
Location Contig6117: 39319-42775
Sequence    

Annotation

kegg
ID rcu:RCOM_0553850
description hypothetical protein
nr
ID XP_012079046.1
description PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
swissprot
ID Q41060
description Seed biotin-containing protein SBP65 OS=Pisum sativum GN=SBP65 PE=1 SV=1
trembl
ID A0A067K6E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12242 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51002: 35741-38611
cDNA
(Sanger)
(ID:Location)		 014_F18.ab1: 38470-38588

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006117_040 0.0 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
2 Hb_002163_040 0.0840402854 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000080_120 0.0918849206 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
4 Hb_002893_070 0.094323823 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
5 Hb_021346_030 0.1016021783 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
6 Hb_000224_160 0.1048061701 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_000134_310 0.1067562691 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
8 Hb_003440_060 0.1095014878 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
9 Hb_000723_100 0.1169271175 - - phosphoglycerate kinase, putative [Ricinus communis]
10 Hb_001489_050 0.1185690853 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
11 Hb_002217_260 0.1189087047 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
12 Hb_001951_180 0.1205610881 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_004837_030 0.1217708434 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
14 Hb_029695_110 0.1229291595 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
15 Hb_002639_140 0.1238615443 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
16 Hb_035755_010 0.1247193542 - - unknown [Populus trichocarpa]
17 Hb_001584_200 0.1249377299 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
18 Hb_000107_570 0.1252189028 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
19 Hb_036790_080 0.1256067065 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
20 Hb_003666_030 0.1289377899 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]

Gene co-expression network

sample Hb_006117_040 Hb_006117_040 Hb_002163_040 Hb_002163_040 Hb_006117_040--Hb_002163_040 Hb_000080_120 Hb_000080_120 Hb_006117_040--Hb_000080_120 Hb_002893_070 Hb_002893_070 Hb_006117_040--Hb_002893_070 Hb_021346_030 Hb_021346_030 Hb_006117_040--Hb_021346_030 Hb_000224_160 Hb_000224_160 Hb_006117_040--Hb_000224_160 Hb_000134_310 Hb_000134_310 Hb_006117_040--Hb_000134_310 Hb_012022_150 Hb_012022_150 Hb_002163_040--Hb_012022_150 Hb_002163_040--Hb_000080_120 Hb_002163_040--Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_002163_040--Hb_001584_200 Hb_022693_140 Hb_022693_140 Hb_002163_040--Hb_022693_140 Hb_000080_120--Hb_002893_070 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000080_120--Hb_000224_160 Hb_000076_130 Hb_000076_130 Hb_000080_120--Hb_000076_130 Hb_000080_120--Hb_012022_150 Hb_003440_060 Hb_003440_060 Hb_002893_070--Hb_003440_060 Hb_002893_070--Hb_022693_140 Hb_002893_070--Hb_000224_160 Hb_000723_100 Hb_000723_100 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_021346_030--Hb_000080_120 Hb_000816_100 Hb_000816_100 Hb_021346_030--Hb_000816_100 Hb_000224_160--Hb_001584_200 Hb_000224_160--Hb_012022_150 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170 Hb_000134_310--Hb_003440_060 Hb_000665_160 Hb_000665_160 Hb_000134_310--Hb_000665_160 Hb_000134_310--Hb_002893_070 Hb_000134_310--Hb_000723_100 Hb_000134_310--Hb_000080_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.234992 0.129927 0.231464 0.0996866 0.330866 0.330262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.327866 0.286579 0.160636 0.103157 0.536338

CAGE analysis