Hb_000816_100

Information

Type -
Description -
Location Contig816: 77401-80581
Sequence    

Annotation

kegg
ID rcu:RCOM_0688760
description APO protein 3, mitochondrial precursor, putative
nr
ID XP_012091195.1
description PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9XIR4
description APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1
trembl
ID A0A067JD05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03358 PE=4 SV=1
Gene Ontology
ID GO:0009507
description apo protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59407: 77281-78129 , PASA_asmbl_59408: 78160-80448 , PASA_asmbl_59409: 78563-80492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_100 0.0 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_048141_020 0.0752854347 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
3 Hb_001089_060 0.0760523321 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
4 Hb_001259_020 0.0808008433 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
5 Hb_023278_010 0.082382787 - - Chaperone protein DnaJ [Glycine soja]
6 Hb_021346_030 0.086727371 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
7 Hb_011931_060 0.0897549094 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
8 Hb_000015_100 0.0899101951 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_000948_170 0.0921214176 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
10 Hb_005470_020 0.0955867605 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
11 Hb_000033_110 0.0975143648 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
12 Hb_000627_250 0.0975615521 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
13 Hb_000300_120 0.0994368963 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_000016_130 0.1044813873 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
15 Hb_000181_240 0.1052519915 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
16 Hb_000331_560 0.1077508843 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
17 Hb_002053_110 0.1088169987 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002027_090 0.1088284767 - - -
19 Hb_010812_050 0.1095987366 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
20 Hb_000080_120 0.1138414434 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]

Gene co-expression network

sample Hb_000816_100 Hb_000816_100 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_001259_020 Hb_001259_020 Hb_000816_100--Hb_001259_020 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060 Hb_048141_020--Hb_023278_010 Hb_005470_020 Hb_005470_020 Hb_048141_020--Hb_005470_020 Hb_000015_100 Hb_000015_100 Hb_048141_020--Hb_000015_100 Hb_001489_050 Hb_001489_050 Hb_048141_020--Hb_001489_050 Hb_048141_020--Hb_011931_060 Hb_000016_130 Hb_000016_130 Hb_001089_060--Hb_000016_130 Hb_000300_120 Hb_000300_120 Hb_001089_060--Hb_000300_120 Hb_000033_110 Hb_000033_110 Hb_001089_060--Hb_000033_110 Hb_001498_010 Hb_001498_010 Hb_001089_060--Hb_001498_010 Hb_001089_060--Hb_001259_020 Hb_000661_030 Hb_000661_030 Hb_001259_020--Hb_000661_030 Hb_003203_030 Hb_003203_030 Hb_001259_020--Hb_003203_030 Hb_000331_560 Hb_000331_560 Hb_001259_020--Hb_000331_560 Hb_000627_250 Hb_000627_250 Hb_001259_020--Hb_000627_250 Hb_001259_020--Hb_001498_010 Hb_000076_130 Hb_000076_130 Hb_023278_010--Hb_000076_130 Hb_006915_070 Hb_006915_070 Hb_023278_010--Hb_006915_070 Hb_006445_010 Hb_006445_010 Hb_023278_010--Hb_006445_010 Hb_000544_010 Hb_000544_010 Hb_023278_010--Hb_000544_010 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_000479_170 Hb_000479_170 Hb_011931_060--Hb_000479_170 Hb_002368_070 Hb_002368_070 Hb_011931_060--Hb_002368_070 Hb_000958_070 Hb_000958_070 Hb_011931_060--Hb_000958_070 Hb_011931_060--Hb_000331_560 Hb_011931_060--Hb_000033_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40004 6.47124 7.54819 6.65131 13.3865 13.7672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.30827 5.3208 6.40367 4.58188 22.0544

CAGE analysis