Hb_006445_010

Information

Type -
Description -
Location Contig6445: 753-21570
Sequence    

Annotation

kegg
ID rcu:RCOM_0867590
description reticulon3-A3, putative
nr
ID XP_012079766.1
description PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15383 PE=4 SV=1
Gene Ontology
ID GO:0005768
description xyloglucanase 113 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52230: 4207-21242 , PASA_asmbl_52232: 18662-19004 , PASA_asmbl_52233: 12539-12657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006445_010 0.0 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
2 Hb_000544_010 0.0659985119 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
3 Hb_002749_110 0.0739984279 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
4 Hb_007426_150 0.0824675424 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
5 Hb_000429_220 0.0830912584 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
6 Hb_000152_260 0.0859050545 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
7 Hb_028308_010 0.0864010717 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
8 Hb_002273_120 0.0864243257 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
9 Hb_001623_480 0.0866885808 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
10 Hb_001369_040 0.0877706064 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
11 Hb_004453_110 0.0888689776 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
12 Hb_012053_080 0.0897186046 - - AP-2 complex subunit alpha, putative [Ricinus communis]
13 Hb_089140_050 0.089794899 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
14 Hb_023278_010 0.089875845 - - Chaperone protein DnaJ [Glycine soja]
15 Hb_001195_560 0.0906181492 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
16 Hb_000866_470 0.0907681885 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
17 Hb_000031_290 0.0914389215 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
18 Hb_160459_040 0.0918084109 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
19 Hb_001300_070 0.0918233356 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_001473_090 0.0930301258 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]

Gene co-expression network

sample Hb_006445_010 Hb_006445_010 Hb_000544_010 Hb_000544_010 Hb_006445_010--Hb_000544_010 Hb_002749_110 Hb_002749_110 Hb_006445_010--Hb_002749_110 Hb_007426_150 Hb_007426_150 Hb_006445_010--Hb_007426_150 Hb_000429_220 Hb_000429_220 Hb_006445_010--Hb_000429_220 Hb_000152_260 Hb_000152_260 Hb_006445_010--Hb_000152_260 Hb_028308_010 Hb_028308_010 Hb_006445_010--Hb_028308_010 Hb_000665_160 Hb_000665_160 Hb_000544_010--Hb_000665_160 Hb_000076_130 Hb_000076_130 Hb_000544_010--Hb_000076_130 Hb_034432_030 Hb_034432_030 Hb_000544_010--Hb_034432_030 Hb_001379_110 Hb_001379_110 Hb_000544_010--Hb_001379_110 Hb_000544_010--Hb_002749_110 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_001195_560 Hb_001195_560 Hb_007426_150--Hb_001195_560 Hb_000933_020 Hb_000933_020 Hb_007426_150--Hb_000933_020 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_011618_080 Hb_011618_080 Hb_007426_150--Hb_011618_080 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_007426_150--Hb_000429_220 Hb_004453_110 Hb_004453_110 Hb_000429_220--Hb_004453_110 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_089140_050 Hb_089140_050 Hb_000429_220--Hb_089140_050 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_027380_140 Hb_027380_140 Hb_000429_220--Hb_027380_140 Hb_002823_030 Hb_002823_030 Hb_000429_220--Hb_002823_030 Hb_001427_190 Hb_001427_190 Hb_000152_260--Hb_001427_190 Hb_002422_050 Hb_002422_050 Hb_000152_260--Hb_002422_050 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_002374_260 Hb_002374_260 Hb_000152_260--Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_000152_260--Hb_003878_110 Hb_000777_050 Hb_000777_050 Hb_028308_010--Hb_000777_050 Hb_028308_010--Hb_001195_560 Hb_009296_010 Hb_009296_010 Hb_028308_010--Hb_009296_010 Hb_000333_060 Hb_000333_060 Hb_028308_010--Hb_000333_060 Hb_002398_030 Hb_002398_030 Hb_028308_010--Hb_002398_030 Hb_001619_150 Hb_001619_150 Hb_028308_010--Hb_001619_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7233 9.10284 8.89361 8.47833 18.7981 17.7108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3389 5.19259 5.09613 7.94551 12.5666

CAGE analysis