Hb_001427_190

Information

Type -
Description -
Location Contig1427: 158767-162663
Sequence    

Annotation

kegg
ID rcu:RCOM_1048220
description histone acetyltransferase type B catalytic subunit, putative (EC:2.3.1.48)
nr
ID XP_012076804.1
description PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
swissprot
ID Q9FJT8
description Histone acetyltransferase type B catalytic subunit OS=Arabidopsis thaliana GN=HAG2 PE=2 SV=1
trembl
ID A0A067KFL1
description Histone acetyltransferase OS=Jatropha curcas GN=JCGZ_07324 PE=3 SV=1
Gene Ontology
ID GO:0005634
description histone acetyltransferase type b catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11327: 158805-162225 , PASA_asmbl_11328: 158857-160760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_190 0.0 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
2 Hb_011930_080 0.051266689 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
3 Hb_001935_110 0.0601969194 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
4 Hb_000152_260 0.065158798 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
5 Hb_019654_040 0.0669390794 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
6 Hb_002078_100 0.0703366708 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
7 Hb_002888_070 0.0723238367 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
8 Hb_001307_080 0.073850895 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
9 Hb_003638_090 0.0745745284 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
10 Hb_001369_040 0.078007415 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
11 Hb_005053_010 0.0794782372 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
12 Hb_002093_030 0.0794833228 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
13 Hb_002374_260 0.0799873424 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
14 Hb_002749_110 0.0809531199 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
15 Hb_000922_140 0.0816327809 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
16 Hb_005892_030 0.0823495613 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
17 Hb_000086_560 0.0828514912 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
18 Hb_000648_100 0.0830914675 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
19 Hb_000333_060 0.0832551769 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
20 Hb_005332_020 0.0837190543 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001427_190 Hb_001427_190 Hb_011930_080 Hb_011930_080 Hb_001427_190--Hb_011930_080 Hb_001935_110 Hb_001935_110 Hb_001427_190--Hb_001935_110 Hb_000152_260 Hb_000152_260 Hb_001427_190--Hb_000152_260 Hb_019654_040 Hb_019654_040 Hb_001427_190--Hb_019654_040 Hb_002078_100 Hb_002078_100 Hb_001427_190--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_001427_190--Hb_002888_070 Hb_002374_320 Hb_002374_320 Hb_011930_080--Hb_002374_320 Hb_011930_080--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_011930_080--Hb_000648_100 Hb_011930_080--Hb_002078_100 Hb_011930_080--Hb_002888_070 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_001935_110--Hb_019654_040 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_000470_070 Hb_000470_070 Hb_001935_110--Hb_000470_070 Hb_001935_110--Hb_002078_100 Hb_002749_110 Hb_002749_110 Hb_000152_260--Hb_002749_110 Hb_002422_050 Hb_002422_050 Hb_000152_260--Hb_002422_050 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_002374_260 Hb_002374_260 Hb_000152_260--Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_000152_260--Hb_003878_110 Hb_019654_040--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_019654_040--Hb_009296_010 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_002078_100--Hb_000470_070 Hb_002078_100--Hb_009296_010 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040 Hb_000868_060 Hb_000868_060 Hb_002888_070--Hb_000868_060 Hb_003126_100 Hb_003126_100 Hb_002888_070--Hb_003126_100 Hb_000480_010 Hb_000480_010 Hb_002888_070--Hb_000480_010 Hb_000914_080 Hb_000914_080 Hb_002888_070--Hb_000914_080 Hb_001102_080 Hb_001102_080 Hb_002888_070--Hb_001102_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8714 15.7502 21.5714 9.91048 28.5327 29.5822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4001 8.49137 8.86761 19.5663 14.2845

CAGE analysis