Hb_001102_080

Information

Type -
Description -
Location Contig1102: 63759-78120
Sequence    

Annotation

kegg
ID tcc:TCM_029983
description Transducin/WD40 repeat-like superfamily protein isoform 1
nr
ID XP_012091497.1
description PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
swissprot
ID O65418
description Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=2 SV=2
trembl
ID A0A067JMZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21360 PE=4 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03133: 63699-64104 , PASA_asmbl_03134: 65334-65442 , PASA_asmbl_03135: 65829-68314 , PASA_asmbl_03136: 68759-74941 , PASA_asmbl_03137: 74992-77118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_080 0.0 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
2 Hb_000480_010 0.0628754544 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002888_070 0.0693916265 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
4 Hb_007044_040 0.0697057161 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
5 Hb_000868_060 0.0705987887 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
6 Hb_000270_460 0.0740153575 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
7 Hb_018790_070 0.0744104868 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
8 Hb_032278_020 0.0807408714 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
9 Hb_001050_010 0.0821693561 - - Advillin [Gossypium arboreum]
10 Hb_000059_140 0.0822212341 - - rnase h, putative [Ricinus communis]
11 Hb_000395_020 0.0830130282 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
12 Hb_003126_100 0.0841571642 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
13 Hb_002942_050 0.0844605513 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
14 Hb_000392_050 0.0852617055 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
15 Hb_001427_190 0.0872419108 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
16 Hb_000914_080 0.0883292695 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_008556_030 0.0899114518 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
18 Hb_011609_170 0.0907674164 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
19 Hb_135377_010 0.0908745048 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
20 Hb_002093_030 0.0915186409 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_080 Hb_001102_080 Hb_000480_010 Hb_000480_010 Hb_001102_080--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_003126_100 Hb_003126_100 Hb_000480_010--Hb_003126_100 Hb_000480_010--Hb_002888_070 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000480_010--Hb_000868_060 Hb_000480_010--Hb_007044_040 Hb_002888_070--Hb_000868_060 Hb_002888_070--Hb_003126_100 Hb_000914_080 Hb_000914_080 Hb_002888_070--Hb_000914_080 Hb_011930_080 Hb_011930_080 Hb_002888_070--Hb_011930_080 Hb_007044_040--Hb_003126_100 Hb_002093_030 Hb_002093_030 Hb_007044_040--Hb_002093_030 Hb_011915_010 Hb_011915_010 Hb_007044_040--Hb_011915_010 Hb_007044_040--Hb_002888_070 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_007982_070 Hb_007982_070 Hb_000270_460--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_000270_460--Hb_000300_360 Hb_001143_180 Hb_001143_180 Hb_000270_460--Hb_001143_180 Hb_002045_150 Hb_002045_150 Hb_000270_460--Hb_002045_150 Hb_007558_120 Hb_007558_120 Hb_000270_460--Hb_007558_120 Hb_002942_050 Hb_002942_050 Hb_018790_070--Hb_002942_050 Hb_000392_050 Hb_000392_050 Hb_018790_070--Hb_000392_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_018790_070--Hb_000395_020 Hb_018790_070--Hb_000480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.71847 2.11481 3.99402 2.13387 5.40783 5.17182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25696 1.86545 1.51253 3.21505 1.52349

CAGE analysis