Hb_001085_320

Information

Type transcription factor
Description TF Family: LUG
Location Contig1085: 239039-247170
Sequence    

Annotation

kegg
ID rcu:RCOM_1020200
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_002518113.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID B9RWJ4
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1020200 PE=4 SV=1
Gene Ontology
ID GO:0016905
description transcriptional corepressor leunig-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02605: 239113-247160
cDNA
(Sanger)
(ID:Location)		 012_C11.ab1: 245442-247160

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_320 0.0 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
2 Hb_030131_040 0.066880468 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
3 Hb_000868_060 0.0720596569 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
4 Hb_000059_140 0.0747633678 - - rnase h, putative [Ricinus communis]
5 Hb_015763_030 0.0758370503 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007558_120 0.0758691967 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
7 Hb_001454_320 0.0771950365 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
8 Hb_005892_030 0.0780359106 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
9 Hb_002273_130 0.0780414281 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
10 Hb_000648_100 0.0782008108 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_010931_040 0.0795331598 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
12 Hb_000796_190 0.079948552 - - hypothetical protein F383_31148 [Gossypium arboreum]
13 Hb_009151_020 0.0804966077 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
14 Hb_003464_020 0.0809518517 - - srpk, putative [Ricinus communis]
15 Hb_002888_070 0.0813571503 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
16 Hb_003680_230 0.082594453 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
17 Hb_000329_130 0.082638683 - - beta-tubulin cofactor d, putative [Ricinus communis]
18 Hb_000031_290 0.0829995705 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
19 Hb_001473_090 0.0839884615 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
20 Hb_002942_050 0.0845357172 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001085_320 Hb_001085_320 Hb_030131_040 Hb_030131_040 Hb_001085_320--Hb_030131_040 Hb_000868_060 Hb_000868_060 Hb_001085_320--Hb_000868_060 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_015763_030 Hb_015763_030 Hb_001085_320--Hb_015763_030 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320 Hb_002273_130 Hb_002273_130 Hb_030131_040--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_030131_040--Hb_001341_120 Hb_000913_050 Hb_000913_050 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_009222_010 Hb_009222_010 Hb_000059_140--Hb_009222_010 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340 Hb_000029_320 Hb_000029_320 Hb_015763_030--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_015763_030--Hb_003464_020 Hb_002070_070 Hb_002070_070 Hb_015763_030--Hb_002070_070 Hb_021409_170 Hb_021409_170 Hb_015763_030--Hb_021409_170 Hb_010180_040 Hb_010180_040 Hb_015763_030--Hb_010180_040 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_003124_130 Hb_003124_130 Hb_001454_320--Hb_003124_130 Hb_000160_290 Hb_000160_290 Hb_001454_320--Hb_000160_290 Hb_001454_320--Hb_000796_190 Hb_001454_320--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9845 17.3397 16.9612 16.0859 29.4888 35.2113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0932 8.66706 7.41398 13.7701 10.102

CAGE analysis