Hb_001541_090

Information

Type -
Description -
Location Contig1541: 82932-90365
Sequence    

Annotation

kegg
ID rcu:RCOM_0794110
description hypothetical protein
nr
ID XP_012085516.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JRU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17839 PE=4 SV=1
Gene Ontology
ID GO:0005768
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13277: 82948-90330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_090 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_002273_130 0.0666567734 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
3 Hb_001341_120 0.0739623591 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
4 Hb_030131_040 0.0742213907 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
5 Hb_008103_040 0.074411213 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
6 Hb_001488_410 0.0745689486 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
7 Hb_003464_020 0.0877249021 - - srpk, putative [Ricinus communis]
8 Hb_012023_020 0.0880452778 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
9 Hb_015763_030 0.0895604507 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007426_150 0.0905885495 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
11 Hb_004994_040 0.0916104548 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_000441_180 0.0920954429 - - Early endosome antigen, putative [Ricinus communis]
13 Hb_002273_120 0.0924968171 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
14 Hb_001085_320 0.0947404981 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
15 Hb_001143_110 0.0950799838 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
16 Hb_103012_010 0.0951845937 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_005211_100 0.0953445897 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
18 Hb_019053_020 0.0972642417 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
19 Hb_000023_190 0.0975631833 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
20 Hb_000059_150 0.0983169666 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_001541_090 Hb_001541_090 Hb_002273_130 Hb_002273_130 Hb_001541_090--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_001541_090--Hb_001341_120 Hb_030131_040 Hb_030131_040 Hb_001541_090--Hb_030131_040 Hb_008103_040 Hb_008103_040 Hb_001541_090--Hb_008103_040 Hb_001488_410 Hb_001488_410 Hb_001541_090--Hb_001488_410 Hb_003464_020 Hb_003464_020 Hb_001541_090--Hb_003464_020 Hb_002273_130--Hb_030131_040 Hb_002273_130--Hb_001341_120 Hb_000076_270 Hb_000076_270 Hb_002273_130--Hb_000076_270 Hb_000059_150 Hb_000059_150 Hb_002273_130--Hb_000059_150 Hb_001300_070 Hb_001300_070 Hb_002273_130--Hb_001300_070 Hb_001341_120--Hb_030131_040 Hb_001341_120--Hb_000076_270 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_000913_050 Hb_000913_050 Hb_001341_120--Hb_000913_050 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_030131_040--Hb_000913_050 Hb_030131_040--Hb_001488_410 Hb_009529_030 Hb_009529_030 Hb_008103_040--Hb_009529_030 Hb_005147_060 Hb_005147_060 Hb_008103_040--Hb_005147_060 Hb_008103_040--Hb_001341_120 Hb_007426_150 Hb_007426_150 Hb_008103_040--Hb_007426_150 Hb_000212_320 Hb_000212_320 Hb_008103_040--Hb_000212_320 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2265 13.6436 20.1057 27.5074 42.7822 51.9638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6262 11.3219 13.3965 22.0103 14.5761

CAGE analysis