Hb_007426_150

Information

Type -
Description -
Location Contig7426: 158115-159392
Sequence    

Annotation

kegg
ID rcu:RCOM_0631070
description hypothetical protein
nr
ID XP_012072137.1
description PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
swissprot
ID Q9FNK5
description F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1
trembl
ID A0A067KSL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04641 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at5g46170-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56552: 157880-160295 , PASA_asmbl_56553: 157880-160295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_150 0.0 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
2 Hb_001195_560 0.0552026757 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
3 Hb_000933_020 0.0730904485 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003018_130 0.0761011965 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
5 Hb_011618_080 0.0793793429 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
6 Hb_002273_120 0.0802003231 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
7 Hb_000429_220 0.0802763165 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
8 Hb_009529_030 0.0812518228 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
9 Hb_002044_050 0.0818405706 - - -
10 Hb_006445_010 0.0824675424 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
11 Hb_005731_090 0.0828404567 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
12 Hb_017295_010 0.0845494565 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_001473_090 0.0862544223 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
14 Hb_001300_070 0.0870682875 - - OTU domain-containing protein 6B, putative [Ricinus communis]
15 Hb_000085_150 0.0873821274 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
16 Hb_017700_010 0.0875495775 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
17 Hb_028308_010 0.0877881833 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
18 Hb_004453_110 0.0887011836 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
19 Hb_002749_110 0.0891477816 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
20 Hb_002273_130 0.0892506602 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]

Gene co-expression network

sample Hb_007426_150 Hb_007426_150 Hb_001195_560 Hb_001195_560 Hb_007426_150--Hb_001195_560 Hb_000933_020 Hb_000933_020 Hb_007426_150--Hb_000933_020 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_011618_080 Hb_011618_080 Hb_007426_150--Hb_011618_080 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_000429_220 Hb_000429_220 Hb_007426_150--Hb_000429_220 Hb_001195_560--Hb_003018_130 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_002823_030 Hb_002823_030 Hb_001195_560--Hb_002823_030 Hb_003605_130 Hb_003605_130 Hb_000933_020--Hb_003605_130 Hb_000123_090 Hb_000123_090 Hb_000933_020--Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000933_020--Hb_008864_110 Hb_000002_490 Hb_000002_490 Hb_000933_020--Hb_000002_490 Hb_000933_020--Hb_001195_560 Hb_003018_130--Hb_002823_030 Hb_002749_110 Hb_002749_110 Hb_003018_130--Hb_002749_110 Hb_002835_230 Hb_002835_230 Hb_003018_130--Hb_002835_230 Hb_004785_100 Hb_004785_100 Hb_003018_130--Hb_004785_100 Hb_000574_440 Hb_000574_440 Hb_003018_130--Hb_000574_440 Hb_034432_030 Hb_034432_030 Hb_011618_080--Hb_034432_030 Hb_001619_150 Hb_001619_150 Hb_011618_080--Hb_001619_150 Hb_011618_080--Hb_000002_490 Hb_011618_080--Hb_001195_560 Hb_007765_080 Hb_007765_080 Hb_011618_080--Hb_007765_080 Hb_009529_030 Hb_009529_030 Hb_002273_120--Hb_009529_030 Hb_002785_050 Hb_002785_050 Hb_002273_120--Hb_002785_050 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_002273_120--Hb_032050_040 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_017295_010 Hb_017295_010 Hb_002273_120--Hb_017295_010 Hb_004453_110 Hb_004453_110 Hb_000429_220--Hb_004453_110 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_089140_050 Hb_089140_050 Hb_000429_220--Hb_089140_050 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_027380_140 Hb_027380_140 Hb_000429_220--Hb_027380_140 Hb_000429_220--Hb_002823_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2595 24.6137 20.1305 32.0357 54.332 44.4505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5857 14.8355 19.6161 20.7 23.0589

CAGE analysis