Hb_008864_110

Information

Type -
Description -
Location Contig8864: 88912-93507
Sequence    

Annotation

kegg
ID rcu:RCOM_0938350
description Protein ariadne-1, putative
nr
ID XP_012069442.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
swissprot
ID Q949V6
description Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1
trembl
ID A0A067LN38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10050 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase ari2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61513: 89028-93246 , PASA_asmbl_61514: 92197-93397 , PASA_asmbl_61515: 91721-91987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008864_110 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
2 Hb_003605_130 0.0521266874 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
3 Hb_002400_470 0.0532054202 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000645_120 0.0615695585 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
5 Hb_000123_090 0.0630475851 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
6 Hb_001047_030 0.0635783626 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
7 Hb_000538_100 0.0635991212 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000322_100 0.0678194048 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
9 Hb_010193_050 0.0681501334 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000173_510 0.0690413548 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
11 Hb_000976_320 0.0701849779 - - UPF0061 protein azo1574 [Morus notabilis]
12 Hb_002304_090 0.0710374759 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
13 Hb_000933_020 0.0718344879 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002255_050 0.0719116756 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000214_040 0.0723227541 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005532_050 0.072953906 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_000236_380 0.0730733493 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_002078_020 0.0756702709 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
19 Hb_002477_130 0.0758382416 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000510_310 0.0759509119 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]

Gene co-expression network

sample Hb_008864_110 Hb_008864_110 Hb_003605_130 Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_000123_090 Hb_000123_090 Hb_008864_110--Hb_000123_090 Hb_001047_030 Hb_001047_030 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_000214_040 Hb_000214_040 Hb_003605_130--Hb_000214_040 Hb_000933_020 Hb_000933_020 Hb_003605_130--Hb_000933_020 Hb_010193_050 Hb_010193_050 Hb_003605_130--Hb_010193_050 Hb_002823_030 Hb_002823_030 Hb_003605_130--Hb_002823_030 Hb_001140_350 Hb_001140_350 Hb_003605_130--Hb_001140_350 Hb_002400_470--Hb_001047_030 Hb_057878_010 Hb_057878_010 Hb_002400_470--Hb_057878_010 Hb_000236_380 Hb_000236_380 Hb_002400_470--Hb_000236_380 Hb_002400_470--Hb_000123_090 Hb_005532_050 Hb_005532_050 Hb_002400_470--Hb_005532_050 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_000645_120--Hb_001140_350 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_000123_090--Hb_000933_020 Hb_000123_090--Hb_003605_130 Hb_001195_560 Hb_001195_560 Hb_000123_090--Hb_001195_560 Hb_000123_090--Hb_001047_030 Hb_001301_200 Hb_001301_200 Hb_001047_030--Hb_001301_200 Hb_007904_200 Hb_007904_200 Hb_001047_030--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_001047_030--Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_001047_030--Hb_010457_030 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.15 12.4359 9.46793 12.1298 23.2727 22.7176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2752 9.92573 11.7201 9.10401 6.77848

CAGE analysis