Hb_000214_040

Information

Type -
Description -
Location Contig214: 114715-115803
Sequence    

Annotation

kegg
ID rcu:RCOM_1754210
description hypothetical protein
nr
ID XP_002513724.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJ05
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1754210 PE=4 SV=1
Gene Ontology
ID GO:0005576
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22099: 113166-115599 , PASA_asmbl_22102: 116648-128311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000214_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003605_130 0.0413603999 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
3 Hb_008864_110 0.0723227541 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
4 Hb_003680_150 0.077590131 - - srpk, putative [Ricinus communis]
5 Hb_001828_160 0.0778315371 - - hypothetical protein F775_31105 [Aegilops tauschii]
6 Hb_010193_050 0.0789073871 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000309_040 0.0793263861 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
8 Hb_002823_030 0.0803508748 - - -
9 Hb_000123_090 0.080620263 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
10 Hb_004055_150 0.0818335256 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001104_180 0.0824922773 - - PREDICTED: ribosome production factor 2 homolog isoform X1 [Jatropha curcas]
12 Hb_006620_020 0.0825217846 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
13 Hb_001946_040 0.0826571921 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000853_230 0.0840426373 - - syntaxin, putative [Ricinus communis]
15 Hb_000933_020 0.0860233589 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005993_050 0.0861254358 - - Protein AFR, putative [Ricinus communis]
17 Hb_003018_130 0.0876101952 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
18 Hb_006960_050 0.0891424416 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
19 Hb_000959_270 0.0894173958 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
20 Hb_000207_310 0.090183895 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]

Gene co-expression network

sample Hb_000214_040 Hb_000214_040 Hb_003605_130 Hb_003605_130 Hb_000214_040--Hb_003605_130 Hb_008864_110 Hb_008864_110 Hb_000214_040--Hb_008864_110 Hb_003680_150 Hb_003680_150 Hb_000214_040--Hb_003680_150 Hb_001828_160 Hb_001828_160 Hb_000214_040--Hb_001828_160 Hb_010193_050 Hb_010193_050 Hb_000214_040--Hb_010193_050 Hb_000309_040 Hb_000309_040 Hb_000214_040--Hb_000309_040 Hb_003605_130--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_003605_130--Hb_000933_020 Hb_003605_130--Hb_010193_050 Hb_002823_030 Hb_002823_030 Hb_003605_130--Hb_002823_030 Hb_001140_350 Hb_001140_350 Hb_003605_130--Hb_001140_350 Hb_002400_470 Hb_002400_470 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_000123_090 Hb_000123_090 Hb_008864_110--Hb_000123_090 Hb_001047_030 Hb_001047_030 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_000207_310 Hb_000207_310 Hb_001828_160--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_001828_160--Hb_000913_050 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_000116_180 Hb_000116_180 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200 Hb_000567_010 Hb_000567_010 Hb_010193_050--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_010193_050--Hb_003124_130 Hb_000768_110 Hb_000768_110 Hb_010193_050--Hb_000768_110 Hb_000329_130 Hb_000329_130 Hb_010193_050--Hb_000329_130 Hb_010193_050--Hb_000645_120 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_001051_080 Hb_001051_080 Hb_000309_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.409 11.993 9.59731 13.2639 19.6015 18.2414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66769 12.8817 9.95952 9.56286 8.56441

CAGE analysis