Hb_000913_050

Information

Type -
Description -
Location Contig913: 85904-98168
Sequence    

Annotation

kegg
ID rcu:RCOM_1134440
description GTP binding protein, putative
nr
ID KDP45722.1
description hypothetical protein JCGZ_17329 [Jatropha curcas]
swissprot
ID Q89BP9
description Probable GTP-binding protein EngB OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=engB PE=3 SV=1
trembl
ID A0A067LBI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17329 PE=3 SV=1
Gene Ontology
ID GO:0000166
description methyl- -binding domain-containing protein 13 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62169: 85910-98158
cDNA
(Sanger)
(ID:Location)		 037_H17.ab1: 97221-98158

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000913_050 0.0 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
2 Hb_001828_160 0.0579296548 - - hypothetical protein F775_31105 [Aegilops tauschii]
3 Hb_000207_310 0.0613818883 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
4 Hb_000367_130 0.062202258 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000029_130 0.0647457251 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
6 Hb_000116_180 0.0687693898 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
7 Hb_001444_010 0.06951527 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
8 Hb_030131_040 0.0699945465 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
9 Hb_001341_120 0.070226091 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
10 Hb_004837_190 0.0703059269 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
11 Hb_006620_020 0.0720342326 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_001983_030 0.0727732986 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
13 Hb_010381_060 0.0749193671 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
14 Hb_000866_470 0.0766004929 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
15 Hb_000059_140 0.0767699388 - - rnase h, putative [Ricinus communis]
16 Hb_001369_180 0.0798754657 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
17 Hb_000794_050 0.0805884304 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
18 Hb_002918_030 0.0808045179 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
19 Hb_001300_070 0.0816864483 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_002093_030 0.0819197265 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]

Gene co-expression network

sample Hb_000913_050 Hb_000913_050 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_001828_160--Hb_000207_310 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_000679_130 Hb_000679_130 Hb_000367_130--Hb_000679_130 Hb_001983_030 Hb_001983_030 Hb_000367_130--Hb_001983_030 Hb_000367_130--Hb_001444_010 Hb_007026_030 Hb_007026_030 Hb_000367_130--Hb_007026_030 Hb_000367_130--Hb_001828_160 Hb_010381_060 Hb_010381_060 Hb_000029_130--Hb_010381_060 Hb_003464_020 Hb_003464_020 Hb_000029_130--Hb_003464_020 Hb_000029_130--Hb_002890_020 Hb_009627_010 Hb_009627_010 Hb_000029_130--Hb_009627_010 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_000025_110 Hb_000025_110 Hb_001444_010--Hb_000025_110 Hb_000618_030 Hb_000618_030 Hb_001444_010--Hb_000618_030 Hb_001444_010--Hb_000679_130 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.186 6.16857 8.66462 7.22742 19.2235 17.2844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5956 9.31895 5.78369 8.46969 8.45454

CAGE analysis