Hb_000025_110

Information

Type -
Description -
Location Contig25: 101667-102740
Sequence    

Annotation

kegg
ID rcu:RCOM_0218710
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP43170.1
description hypothetical protein JCGZ_22722 [Jatropha curcas]
swissprot
ID Q5BIV3
description Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana GN=At1g11900 PE=2 SV=1
trembl
ID A0A067LF86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22722 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g11900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26046: 101806-103270 , PASA_asmbl_26047: 100437-103253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_110 0.0 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
2 Hb_001444_010 0.0579431108 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
3 Hb_006252_040 0.0617285802 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
4 Hb_000618_030 0.06336766 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
5 Hb_000679_130 0.067607976 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_001599_030 0.067755191 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
7 Hb_000212_240 0.0679954721 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_004102_140 0.0706036777 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000820_170 0.0708895191 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
10 Hb_010381_060 0.071041664 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
11 Hb_011139_030 0.0717282059 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
12 Hb_002716_130 0.0750490916 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
13 Hb_016898_010 0.0751022108 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
14 Hb_000567_050 0.0753302489 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
15 Hb_009467_060 0.0756604922 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
16 Hb_023480_010 0.0762644247 - - cellular nucleic acid binding protein, putative [Ricinus communis]
17 Hb_009411_010 0.0764932823 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
18 Hb_000606_090 0.0769799505 - - Far upstream element-binding protein, putative [Ricinus communis]
19 Hb_002174_060 0.0771864375 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
20 Hb_001866_110 0.0789651635 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_110 Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000025_110--Hb_001444_010 Hb_006252_040 Hb_006252_040 Hb_000025_110--Hb_006252_040 Hb_000618_030 Hb_000618_030 Hb_000025_110--Hb_000618_030 Hb_000679_130 Hb_000679_130 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030 Hb_000212_240 Hb_000212_240 Hb_000025_110--Hb_000212_240 Hb_001444_010--Hb_000618_030 Hb_000913_050 Hb_000913_050 Hb_001444_010--Hb_000913_050 Hb_001444_010--Hb_000679_130 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_003952_070 Hb_003952_070 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_000212_240--Hb_004881_020 Hb_000212_240--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_000212_240--Hb_002716_130 Hb_004117_130 Hb_004117_130 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0147 4.80319 4.4466 5.39747 10.4874 14.0791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.91357 5.40135 6.81513 5.0258 6.45225

CAGE analysis