Hb_007262_020

Information

Type -
Description -
Location Contig7262: 30061-33655
Sequence    

Annotation

kegg
ID rcu:RCOM_1445820
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative
nr
ID XP_012067329.1
description PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
swissprot
ID Q9LPW7
description Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1
trembl
ID A0A067LCL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26852 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein auxin signaling f-box 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55860: 30267-33711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007262_020 0.0 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
2 Hb_012098_110 0.0584371996 - - Ribonuclease 3 [Gossypium arboreum]
3 Hb_007904_120 0.073530133 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_000498_010 0.0745041422 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000679_130 0.0784708313 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_000025_110 0.0802702748 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
7 Hb_001444_010 0.08068533 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
8 Hb_030131_040 0.0818852034 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
9 Hb_023480_010 0.0828569413 - - cellular nucleic acid binding protein, putative [Ricinus communis]
10 Hb_006252_040 0.0853119185 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
11 Hb_000606_090 0.0860504888 - - Far upstream element-binding protein, putative [Ricinus communis]
12 Hb_007026_030 0.0861346192 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
13 Hb_001085_250 0.0866589282 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
14 Hb_004994_040 0.0875776125 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_000364_080 0.0889105466 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
16 Hb_000367_130 0.0889265051 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010381_060 0.0901576075 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
18 Hb_001863_260 0.0904175212 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_165928_020 0.0914398472 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
20 Hb_001377_320 0.09272395 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]

Gene co-expression network

sample Hb_007262_020 Hb_007262_020 Hb_012098_110 Hb_012098_110 Hb_007262_020--Hb_012098_110 Hb_007904_120 Hb_007904_120 Hb_007262_020--Hb_007904_120 Hb_000498_010 Hb_000498_010 Hb_007262_020--Hb_000498_010 Hb_000679_130 Hb_000679_130 Hb_007262_020--Hb_000679_130 Hb_000025_110 Hb_000025_110 Hb_007262_020--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_007262_020--Hb_001444_010 Hb_007026_030 Hb_007026_030 Hb_012098_110--Hb_007026_030 Hb_012098_110--Hb_007904_120 Hb_010381_060 Hb_010381_060 Hb_012098_110--Hb_010381_060 Hb_000714_050 Hb_000714_050 Hb_012098_110--Hb_000714_050 Hb_012098_110--Hb_000498_010 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_001377_320 Hb_001377_320 Hb_007904_120--Hb_001377_320 Hb_007007_060 Hb_007007_060 Hb_007904_120--Hb_007007_060 Hb_002022_060 Hb_002022_060 Hb_007904_120--Hb_002022_060 Hb_000390_180 Hb_000390_180 Hb_000498_010--Hb_000390_180 Hb_000879_200 Hb_000879_200 Hb_000498_010--Hb_000879_200 Hb_000618_030 Hb_000618_030 Hb_000498_010--Hb_000618_030 Hb_000853_230 Hb_000853_230 Hb_000498_010--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_000498_010--Hb_001926_030 Hb_000794_050 Hb_000794_050 Hb_000498_010--Hb_000794_050 Hb_000679_130--Hb_000025_110 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_000025_110--Hb_001444_010 Hb_006252_040 Hb_006252_040 Hb_000025_110--Hb_006252_040 Hb_000025_110--Hb_000618_030 Hb_000025_110--Hb_001599_030 Hb_000212_240 Hb_000212_240 Hb_000025_110--Hb_000212_240 Hb_001444_010--Hb_000618_030 Hb_000913_050 Hb_000913_050 Hb_001444_010--Hb_000913_050 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.0556 30.4275 43.9454 24.9416 53.6437 91.3227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7576 27.5821 30.671 27.1728 35.6009

CAGE analysis