Hb_002022_060

Information

Type -
Description -
Location Contig2022: 80978-87955
Sequence    

Annotation

kegg
ID rcu:RCOM_0741630
description hypothetical protein
nr
ID XP_012076977.1
description PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20537: 80923-87955 , PASA_asmbl_20539: 86178-86454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002022_060 0.0 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
2 Hb_001377_320 0.0651794873 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
3 Hb_007904_120 0.0767787346 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_007007_060 0.0814296213 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
5 Hb_003794_010 0.0871798762 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
6 Hb_000009_090 0.089436875 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
7 Hb_162286_010 0.0917484137 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
8 Hb_001789_190 0.0920226784 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
9 Hb_023480_010 0.0931333065 - - cellular nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001500_050 0.0932645841 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
11 Hb_003878_110 0.0954734426 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
12 Hb_008695_020 0.0956424459 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
13 Hb_000044_040 0.0961408447 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
14 Hb_000189_330 0.0961424955 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
15 Hb_004097_070 0.0973316728 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
16 Hb_000260_100 0.100140683 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000498_010 0.1010988038 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001001_080 0.1013075312 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
19 Hb_002997_080 0.1017378184 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
20 Hb_002684_040 0.1018478345 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002022_060 Hb_002022_060 Hb_001377_320 Hb_001377_320 Hb_002022_060--Hb_001377_320 Hb_007904_120 Hb_007904_120 Hb_002022_060--Hb_007904_120 Hb_007007_060 Hb_007007_060 Hb_002022_060--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_002022_060--Hb_003794_010 Hb_000009_090 Hb_000009_090 Hb_002022_060--Hb_000009_090 Hb_162286_010 Hb_162286_010 Hb_002022_060--Hb_162286_010 Hb_003813_040 Hb_003813_040 Hb_001377_320--Hb_003813_040 Hb_001377_320--Hb_007904_120 Hb_000777_050 Hb_000777_050 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_001377_320--Hb_000189_330 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_007262_020 Hb_007262_020 Hb_007904_120--Hb_007262_020 Hb_007904_120--Hb_007007_060 Hb_012098_110 Hb_012098_110 Hb_007904_120--Hb_012098_110 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_003794_010--Hb_000160_210 Hb_003794_010--Hb_000009_090 Hb_003794_010--Hb_007007_060 Hb_001390_110 Hb_001390_110 Hb_003794_010--Hb_001390_110 Hb_003794_010--Hb_007904_120 Hb_002909_050 Hb_002909_050 Hb_003794_010--Hb_002909_050 Hb_000009_090--Hb_000160_210 Hb_005993_050 Hb_005993_050 Hb_000009_090--Hb_005993_050 Hb_000009_090--Hb_007007_060 Hb_000853_230 Hb_000853_230 Hb_000009_090--Hb_000853_230 Hb_005054_230 Hb_005054_230 Hb_000009_090--Hb_005054_230 Hb_000331_110 Hb_000331_110 Hb_162286_010--Hb_000331_110 Hb_000245_220 Hb_000245_220 Hb_162286_010--Hb_000245_220 Hb_003878_110 Hb_003878_110 Hb_162286_010--Hb_003878_110 Hb_162286_010--Hb_007007_060 Hb_079526_030 Hb_079526_030 Hb_162286_010--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_162286_010--Hb_002374_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
240.223 113.235 158.512 86.4016 130.51 158.227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
167.324 80.154 95.0065 75.0133 130.054

CAGE analysis