Hb_007904_120

Information

Type -
Description -
Location Contig7904: 62393-67285
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06180g
description POPTRDRAFT_230358; hypothetical protein
nr
ID XP_012085558.1
description PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYL3
description ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3
trembl
ID A0A067K4M5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17877 PE=3 SV=1
Gene Ontology
ID GO:0016021
description albino3-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58318: 60949-61810 , PASA_asmbl_58319: 62569-67169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_120 0.0 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
2 Hb_001085_250 0.0652058615 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
3 Hb_001377_320 0.0695042916 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
4 Hb_007262_020 0.073530133 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
5 Hb_007007_060 0.0765393722 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
6 Hb_012098_110 0.0767087338 - - Ribonuclease 3 [Gossypium arboreum]
7 Hb_002022_060 0.0767787346 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
8 Hb_008695_020 0.0822825382 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
9 Hb_000794_050 0.082286086 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
10 Hb_001652_080 0.0824445497 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
11 Hb_000368_020 0.0831129665 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
12 Hb_000498_010 0.0837211339 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_003794_010 0.0844362555 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
14 Hb_000679_130 0.0845410666 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_006824_060 0.0858262594 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
16 Hb_007026_030 0.0889544917 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
17 Hb_001235_200 0.0890996398 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002024_040 0.0910221947 - - PREDICTED: adenosine kinase [Jatropha curcas]
19 Hb_023480_010 0.0919956371 - - cellular nucleic acid binding protein, putative [Ricinus communis]
20 Hb_002749_110 0.092980917 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_120 Hb_007904_120 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_001377_320 Hb_001377_320 Hb_007904_120--Hb_001377_320 Hb_007262_020 Hb_007262_020 Hb_007904_120--Hb_007262_020 Hb_007007_060 Hb_007007_060 Hb_007904_120--Hb_007007_060 Hb_012098_110 Hb_012098_110 Hb_007904_120--Hb_012098_110 Hb_002022_060 Hb_002022_060 Hb_007904_120--Hb_002022_060 Hb_001085_250--Hb_007262_020 Hb_001863_260 Hb_001863_260 Hb_001085_250--Hb_001863_260 Hb_007451_050 Hb_007451_050 Hb_001085_250--Hb_007451_050 Hb_001085_250--Hb_001377_320 Hb_006824_060 Hb_006824_060 Hb_001085_250--Hb_006824_060 Hb_003813_040 Hb_003813_040 Hb_001377_320--Hb_003813_040 Hb_001377_320--Hb_002022_060 Hb_000777_050 Hb_000777_050 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_001377_320--Hb_000189_330 Hb_007262_020--Hb_012098_110 Hb_000498_010 Hb_000498_010 Hb_007262_020--Hb_000498_010 Hb_000679_130 Hb_000679_130 Hb_007262_020--Hb_000679_130 Hb_000025_110 Hb_000025_110 Hb_007262_020--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_007262_020--Hb_001444_010 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_007026_030 Hb_007026_030 Hb_012098_110--Hb_007026_030 Hb_010381_060 Hb_010381_060 Hb_012098_110--Hb_010381_060 Hb_000714_050 Hb_000714_050 Hb_012098_110--Hb_000714_050 Hb_012098_110--Hb_000498_010 Hb_002022_060--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_002022_060--Hb_003794_010 Hb_000009_090 Hb_000009_090 Hb_002022_060--Hb_000009_090 Hb_162286_010 Hb_162286_010 Hb_002022_060--Hb_162286_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.2729 26.7221 30.9496 14.481 38.1893 49.2303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9171 16.7215 22.2686 14.9609 30.0281

CAGE analysis