Hb_006824_060

Information

Type -
Description -
Location Contig6824: 74499-81796
Sequence    

Annotation

kegg
ID rcu:RCOM_0810320
description hypothetical protein
nr
ID XP_012093070.1
description PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16281 PE=4 SV=1
Gene Ontology
ID GO:0015996
description mar-binding filament-like protein 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53877: 74486-81871
cDNA
(Sanger)
(ID:Location)		 035_L11.ab1: 79112-81855 , 035_M02.ab1: 76437-81827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006824_060 0.0 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
2 Hb_000368_020 0.0744576236 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
3 Hb_000189_330 0.0855792722 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
4 Hb_007904_120 0.0858262594 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
5 Hb_001863_260 0.0862782867 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_001377_320 0.0876890004 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
7 Hb_008253_010 0.0912925621 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
8 Hb_003813_040 0.0937994063 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
9 Hb_032202_230 0.0957442602 - - peroxisomal biogenesis factor, putative [Ricinus communis]
10 Hb_000794_050 0.098245635 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
11 Hb_001652_080 0.0991531719 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
12 Hb_001621_170 0.1001979258 - - protein binding protein, putative [Ricinus communis]
13 Hb_001357_380 0.100347053 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000031_290 0.1005898059 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
15 Hb_001085_250 0.1026027227 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
16 Hb_002022_060 0.1030394344 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
17 Hb_003029_030 0.1043032599 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
18 Hb_006816_050 0.1060389939 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
19 Hb_007262_020 0.1070305553 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
20 Hb_007943_120 0.1072601353 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_006824_060 Hb_006824_060 Hb_000368_020 Hb_000368_020 Hb_006824_060--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_006824_060--Hb_000189_330 Hb_007904_120 Hb_007904_120 Hb_006824_060--Hb_007904_120 Hb_001863_260 Hb_001863_260 Hb_006824_060--Hb_001863_260 Hb_001377_320 Hb_001377_320 Hb_006824_060--Hb_001377_320 Hb_008253_010 Hb_008253_010 Hb_006824_060--Hb_008253_010 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_001621_170 Hb_001621_170 Hb_000189_330--Hb_001621_170 Hb_003813_040 Hb_003813_040 Hb_000189_330--Hb_003813_040 Hb_000189_330--Hb_001377_320 Hb_001418_040 Hb_001418_040 Hb_000189_330--Hb_001418_040 Hb_001143_180 Hb_001143_180 Hb_000189_330--Hb_001143_180 Hb_000395_020 Hb_000395_020 Hb_000189_330--Hb_000395_020 Hb_001085_250 Hb_001085_250 Hb_007904_120--Hb_001085_250 Hb_007904_120--Hb_001377_320 Hb_007262_020 Hb_007262_020 Hb_007904_120--Hb_007262_020 Hb_007007_060 Hb_007007_060 Hb_007904_120--Hb_007007_060 Hb_012098_110 Hb_012098_110 Hb_007904_120--Hb_012098_110 Hb_002022_060 Hb_002022_060 Hb_007904_120--Hb_002022_060 Hb_134364_010 Hb_134364_010 Hb_001863_260--Hb_134364_010 Hb_030827_030 Hb_030827_030 Hb_001863_260--Hb_030827_030 Hb_001863_260--Hb_007262_020 Hb_001863_260--Hb_001085_250 Hb_001863_260--Hb_008253_010 Hb_001377_320--Hb_003813_040 Hb_001377_320--Hb_002022_060 Hb_000777_050 Hb_000777_050 Hb_001377_320--Hb_000777_050 Hb_001377_320--Hb_000368_020 Hb_009265_080 Hb_009265_080 Hb_008253_010--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_008253_010--Hb_002007_350 Hb_004678_060 Hb_004678_060 Hb_008253_010--Hb_004678_060 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_008253_010--Hb_007590_080 Hb_008253_010--Hb_134364_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
526.573 301.349 402.993 192.526 532.813 510.402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
471.424 190.314 180.58 122.366 244.766

CAGE analysis