Hb_001621_170

Information

Type -
Description -
Location Contig1621: 236833-242101
Sequence    

Annotation

kegg
ID rcu:RCOM_0040610
description protein binding protein, putative
nr
ID XP_002531577.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9M2S6
description E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1
trembl
ID B9T008
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0040610 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase sdir1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14641: 236878-242082 , PASA_asmbl_14642: 238232-238357 , PASA_asmbl_14643: 237888-238719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_170 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000189_330 0.0603603126 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
3 Hb_003020_010 0.0874012357 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
4 Hb_016461_010 0.0874159245 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
5 Hb_011609_080 0.0919260993 - - uv excision repair protein rad23, putative [Ricinus communis]
6 Hb_000395_020 0.0930647117 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
7 Hb_000390_180 0.0947842746 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
8 Hb_003813_040 0.0988882496 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
9 Hb_007632_110 0.0994148205 - - chromatin regulatory protein sir2, putative [Ricinus communis]
10 Hb_001329_130 0.0997879901 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006824_060 0.1001979258 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
12 Hb_001484_060 0.1004270387 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
13 Hb_005288_150 0.1012209572 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
14 Hb_001983_030 0.1027776721 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
15 Hb_007044_040 0.1044546983 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
16 Hb_000368_020 0.1045714864 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
17 Hb_000390_170 0.1046704544 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
18 Hb_000003_600 0.1052494514 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
19 Hb_001357_380 0.1056945467 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_001418_040 0.1058290116 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001621_170 Hb_001621_170 Hb_000189_330 Hb_000189_330 Hb_001621_170--Hb_000189_330 Hb_003020_010 Hb_003020_010 Hb_001621_170--Hb_003020_010 Hb_016461_010 Hb_016461_010 Hb_001621_170--Hb_016461_010 Hb_011609_080 Hb_011609_080 Hb_001621_170--Hb_011609_080 Hb_000395_020 Hb_000395_020 Hb_001621_170--Hb_000395_020 Hb_000390_180 Hb_000390_180 Hb_001621_170--Hb_000390_180 Hb_003813_040 Hb_003813_040 Hb_000189_330--Hb_003813_040 Hb_001377_320 Hb_001377_320 Hb_000189_330--Hb_001377_320 Hb_001418_040 Hb_001418_040 Hb_000189_330--Hb_001418_040 Hb_001143_180 Hb_001143_180 Hb_000189_330--Hb_001143_180 Hb_000189_330--Hb_000395_020 Hb_003020_010--Hb_016461_010 Hb_000390_170 Hb_000390_170 Hb_003020_010--Hb_000390_170 Hb_020367_050 Hb_020367_050 Hb_003020_010--Hb_020367_050 Hb_005288_150 Hb_005288_150 Hb_003020_010--Hb_005288_150 Hb_003020_010--Hb_000390_180 Hb_001329_130 Hb_001329_130 Hb_003020_010--Hb_001329_130 Hb_016461_010--Hb_000390_180 Hb_000617_240 Hb_000617_240 Hb_016461_010--Hb_000617_240 Hb_000498_010 Hb_000498_010 Hb_016461_010--Hb_000498_010 Hb_016461_010--Hb_011609_080 Hb_007632_020 Hb_007632_020 Hb_011609_080--Hb_007632_020 Hb_001486_340 Hb_001486_340 Hb_011609_080--Hb_001486_340 Hb_006355_010 Hb_006355_010 Hb_011609_080--Hb_006355_010 Hb_011609_080--Hb_000390_180 Hb_011609_080--Hb_000498_010 Hb_000868_060 Hb_000868_060 Hb_000395_020--Hb_000868_060 Hb_000523_050 Hb_000523_050 Hb_000395_020--Hb_000523_050 Hb_001040_040 Hb_001040_040 Hb_000395_020--Hb_001040_040 Hb_000395_020--Hb_003813_040 Hb_001050_010 Hb_001050_010 Hb_000395_020--Hb_001050_010 Hb_002078_020 Hb_002078_020 Hb_000395_020--Hb_002078_020 Hb_000390_180--Hb_000498_010 Hb_000853_230 Hb_000853_230 Hb_000390_180--Hb_000853_230 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.7112 26.6171 58.4145 26.6353 66.5487 47.5028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.5046 27.811 23.7129 31.3599 24.0687

CAGE analysis