Hb_020367_050

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig20367: 47828-62971
Sequence    

Annotation

kegg
ID rcu:RCOM_0747390
description geranylgeranyl pyrophosphate synthase, putative (EC:2.5.1.30)
nr
ID XP_002530137.1
description geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
swissprot
ID Q5HZ00
description Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
trembl
ID B9SVW8
description Geranylgeranyl pyrophosphate synthase, putative OS=Ricinus communis GN=RCOM_0747390 PE=3 SV=1
Gene Ontology
ID GO:0008299
description geranylgeranyl pyrophosphate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20860: 48099-62938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020367_050 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
2 Hb_032208_040 0.0532197929 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
3 Hb_001329_130 0.0631354458 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005288_150 0.0648077747 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
5 Hb_000926_310 0.0648678263 - - uncharacterized protein LOC100500241 [Glycine max]
6 Hb_006960_050 0.0663716083 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
7 Hb_007982_080 0.0710533973 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
8 Hb_000649_070 0.0722146119 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
9 Hb_004055_150 0.0749114668 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002639_150 0.0753671896 - - -
11 Hb_001926_030 0.0755780941 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
12 Hb_000260_100 0.0771045266 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004093_090 0.081510083 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
14 Hb_058972_010 0.081545822 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
15 Hb_003020_010 0.0822925444 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
16 Hb_000661_140 0.0827130666 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
17 Hb_003029_030 0.0836373393 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
18 Hb_000866_410 0.0838138291 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
19 Hb_001247_130 0.0846346669 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
20 Hb_073973_130 0.0857265374 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_020367_050 Hb_020367_050 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_001329_130 Hb_001329_130 Hb_020367_050--Hb_001329_130 Hb_005288_150 Hb_005288_150 Hb_020367_050--Hb_005288_150 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_006960_050 Hb_006960_050 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080 Hb_001247_130 Hb_001247_130 Hb_032208_040--Hb_001247_130 Hb_004055_150 Hb_004055_150 Hb_032208_040--Hb_004055_150 Hb_005965_030 Hb_005965_030 Hb_032208_040--Hb_005965_030 Hb_032208_040--Hb_006960_050 Hb_001926_030 Hb_001926_030 Hb_032208_040--Hb_001926_030 Hb_000260_100 Hb_000260_100 Hb_001329_130--Hb_000260_100 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_001329_130--Hb_005288_150 Hb_001329_130--Hb_006960_050 Hb_005288_150--Hb_000260_100 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_000926_310--Hb_002639_150 Hb_000661_140 Hb_000661_140 Hb_000926_310--Hb_000661_140 Hb_003687_230 Hb_003687_230 Hb_000926_310--Hb_003687_230 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_006960_050--Hb_000649_070 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_073973_130 Hb_073973_130 Hb_007982_080--Hb_073973_130 Hb_002197_020 Hb_002197_020 Hb_007982_080--Hb_002197_020 Hb_007982_080--Hb_005288_150 Hb_000185_070 Hb_000185_070 Hb_007982_080--Hb_000185_070 Hb_027428_010 Hb_027428_010 Hb_007982_080--Hb_027428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.592 21.6761 37.632 14.1299 38.0917 26.7743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9594 27.5604 22.1311 17.4087 12.9185

CAGE analysis