Hb_000368_020

Information

Type -
Description -
Location Contig368: 10938-16171
Sequence    

Annotation

kegg
ID rcu:RCOM_1595800
description uroporphyrin-III methyltransferase, putative
nr
ID XP_002510449.1
description uroporphyrin-III methyltransferase, putative [Ricinus communis]
swissprot
ID P74038
description Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1
trembl
ID B9R806
description Uroporphyrin-III methyltransferase, putative OS=Ricinus communis GN=RCOM_1595800 PE=3 SV=1
Gene Ontology
ID GO:0008168
description ribosomal rna small subunit methyltransferase i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37806: 10877-11454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_020 0.0 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
2 Hb_000794_050 0.0551753136 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
3 Hb_003467_010 0.063183098 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
4 Hb_006960_050 0.0735116572 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
5 Hb_106552_050 0.0740192841 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
6 Hb_000926_310 0.0742732886 - - uncharacterized protein LOC100500241 [Glycine max]
7 Hb_006824_060 0.0744576236 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
8 Hb_007026_030 0.0745694905 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
9 Hb_008253_010 0.074599939 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
10 Hb_001357_380 0.075337396 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_021422_010 0.0754354435 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
12 Hb_001377_320 0.0761941784 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
13 Hb_032202_230 0.0767792843 - - peroxisomal biogenesis factor, putative [Ricinus communis]
14 Hb_003029_030 0.0771851733 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
15 Hb_003849_060 0.0781203427 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
16 Hb_000334_270 0.0809810026 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_000140_330 0.0814118341 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
18 Hb_004450_060 0.0823972521 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
19 Hb_002942_050 0.082639516 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
20 Hb_006355_010 0.0827865957 - - PREDICTED: protein NLRC3 [Jatropha curcas]

Gene co-expression network

sample Hb_000368_020 Hb_000368_020 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060 Hb_000926_190 Hb_000926_190 Hb_000794_050--Hb_000926_190 Hb_033720_010 Hb_033720_010 Hb_000794_050--Hb_033720_010 Hb_001390_110 Hb_001390_110 Hb_000794_050--Hb_001390_110 Hb_000853_230 Hb_000853_230 Hb_000794_050--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_000794_050--Hb_006620_020 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003849_060 Hb_003849_060 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_106552_050--Hb_004055_150 Hb_002639_150 Hb_002639_150 Hb_000926_310--Hb_002639_150 Hb_000661_140 Hb_000661_140 Hb_000926_310--Hb_000661_140 Hb_000926_310--Hb_020367_050 Hb_003687_230 Hb_003687_230 Hb_000926_310--Hb_003687_230 Hb_005288_150 Hb_005288_150 Hb_000926_310--Hb_005288_150 Hb_000189_330 Hb_000189_330 Hb_006824_060--Hb_000189_330 Hb_007904_120 Hb_007904_120 Hb_006824_060--Hb_007904_120 Hb_001863_260 Hb_001863_260 Hb_006824_060--Hb_001863_260 Hb_001377_320 Hb_001377_320 Hb_006824_060--Hb_001377_320 Hb_008253_010 Hb_008253_010 Hb_006824_060--Hb_008253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4424 10.2126 11.8411 5.28514 16.2394 16.1052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8429 8.77012 6.3981 5.2686 6.27188

CAGE analysis