Hb_003849_060

Information

Type -
Description -
Location Contig3849: 30316-34944
Sequence    

Annotation

kegg
ID rcu:RCOM_0794250
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085508.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
swissprot
ID Q9SAD9
description Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1
trembl
ID A0A067JS08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17835 PE=4 SV=1
Gene Ontology
ID GO:0005774
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38746: 30682-31022 , PASA_asmbl_38747: 33092-33625 , PASA_asmbl_38748: 33112-33440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
2 Hb_000808_250 0.0555062961 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
3 Hb_000334_270 0.0635983557 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_003467_010 0.0668436193 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
5 Hb_011848_010 0.0732253759 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
6 Hb_000394_190 0.0744571979 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
7 Hb_002192_080 0.0744824045 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
8 Hb_031939_010 0.0750105894 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
9 Hb_001014_050 0.075104887 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
10 Hb_004450_060 0.0764446042 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
11 Hb_002687_140 0.0772840464 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
12 Hb_000189_340 0.0774508058 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
13 Hb_012799_110 0.0774818277 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
14 Hb_009222_010 0.0781068519 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000368_020 0.0781203427 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
16 Hb_011942_080 0.0781574989 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
17 Hb_000174_110 0.0806957967 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
18 Hb_106552_050 0.0808370544 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
19 Hb_003029_030 0.0808895606 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
20 Hb_001142_050 0.081255435 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_060 Hb_003849_060 Hb_000808_250 Hb_000808_250 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003467_010 Hb_003467_010 Hb_003849_060--Hb_003467_010 Hb_011848_010 Hb_011848_010 Hb_003849_060--Hb_011848_010 Hb_000394_190 Hb_000394_190 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_006623_020 Hb_006623_020 Hb_000808_250--Hb_006623_020 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_003467_010--Hb_000394_190 Hb_003091_010 Hb_003091_010 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_011848_010--Hb_004450_060 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_012799_110 Hb_012799_110 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_012389_020 Hb_012389_020 Hb_002192_080--Hb_012389_020 Hb_002192_080--Hb_000261_250 Hb_002192_080--Hb_106552_050 Hb_000107_190 Hb_000107_190 Hb_002192_080--Hb_000107_190 Hb_032920_060 Hb_032920_060 Hb_002192_080--Hb_032920_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06994 3.10638 3.4991 1.35676 5.74554 5.29143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.39088 4.44692 1.95863 2.14561 1.55485

CAGE analysis