Hb_006355_010

Information

Type -
Description -
Location Contig6355: 3812-11783
Sequence    

Annotation

kegg
ID rcu:RCOM_1723070
description protein binding protein, putative
nr
ID XP_012085177.1
description PREDICTED: protein NLRC3 [Jatropha curcas]
swissprot
ID Q7RTR2
description Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2
trembl
ID A0A067JRC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17590 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51942: 3853-4684 , PASA_asmbl_51943: 3853-4656 , PASA_asmbl_51944: 6864-9524 , PASA_asmbl_51946: 4802-7453 , PASA_asmbl_51947: 9882-10481 , PASA_asmbl_51948: 10517-11519 , PASA_asmbl_51949: 11559-11763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_010 0.0 - - PREDICTED: protein NLRC3 [Jatropha curcas]
2 Hb_000179_030 0.0446629396 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
3 Hb_002175_030 0.06532327 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
4 Hb_000334_270 0.0657128303 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
5 Hb_001486_340 0.066731699 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
6 Hb_000771_180 0.0669910033 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_005337_090 0.06880387 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
8 Hb_000853_230 0.0688069708 - - syntaxin, putative [Ricinus communis]
9 Hb_001089_110 0.0691397105 - - conserved hypothetical protein [Ricinus communis]
10 Hb_079526_030 0.0705611121 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
11 Hb_001433_070 0.0729469121 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
12 Hb_000794_050 0.0739601865 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
13 Hb_000926_190 0.0741006205 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
14 Hb_006620_020 0.0751214034 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
15 Hb_000308_030 0.0752024839 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
16 Hb_183612_040 0.0752684656 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
17 Hb_011609_080 0.0758892287 - - uv excision repair protein rad23, putative [Ricinus communis]
18 Hb_023386_040 0.075949548 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
19 Hb_001926_030 0.0763618875 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
20 Hb_001143_180 0.0774338293 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_006355_010 Hb_006355_010 Hb_000179_030 Hb_000179_030 Hb_006355_010--Hb_000179_030 Hb_002175_030 Hb_002175_030 Hb_006355_010--Hb_002175_030 Hb_000334_270 Hb_000334_270 Hb_006355_010--Hb_000334_270 Hb_001486_340 Hb_001486_340 Hb_006355_010--Hb_001486_340 Hb_000771_180 Hb_000771_180 Hb_006355_010--Hb_000771_180 Hb_005337_090 Hb_005337_090 Hb_006355_010--Hb_005337_090 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_023386_040 Hb_023386_040 Hb_000179_030--Hb_023386_040 Hb_005914_060 Hb_005914_060 Hb_000179_030--Hb_005914_060 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_001433_070 Hb_001433_070 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_000334_270--Hb_002175_030 Hb_000538_100 Hb_000538_100 Hb_001486_340--Hb_000538_100 Hb_001486_340--Hb_000308_030 Hb_000174_110 Hb_000174_110 Hb_001486_340--Hb_000174_110 Hb_001486_340--Hb_006620_020 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_050847_020 Hb_050847_020 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.49074 4.69802 4.8125 2.40371 5.73797 7.11449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.71747 4.48609 3.00401 4.50919 2.5682

CAGE analysis