Hb_033834_030

Information

Type -
Description -
Location Contig33834: 20770-34049
Sequence    

Annotation

kegg
ID tcc:TCM_043089
description Nucleolar complex protein 2 isoform 1
nr
ID XP_012086516.1
description PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9ZPV5
description Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=3 SV=2
trembl
ID A0A067JPF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23958 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nucleolar complex protein 2 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35388: 21610-34091 , PASA_asmbl_35389: 30796-33828
cDNA
(Sanger)
(ID:Location)		 009_N15.ab1: 31205-34091 , 028_G10.ab1: 32426-34091 , 049_G09.ab1: 32727-34086

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033834_030 0.0 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
2 Hb_001051_080 0.0616762724 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
3 Hb_001143_180 0.0652645716 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
4 Hb_005337_090 0.0655613279 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
5 Hb_002175_030 0.0658516574 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
6 Hb_000120_430 0.070521162 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
7 Hb_000020_150 0.0706730226 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
8 Hb_001214_060 0.0709972972 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
9 Hb_004631_180 0.0750357185 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
10 Hb_006916_040 0.0760002681 - - 60S ribosomal protein L7a, putative [Ricinus communis]
11 Hb_000005_220 0.0769788522 - - DNA ligase 1, partial [Glycine soja]
12 Hb_000107_190 0.0783471206 - - 50S ribosomal protein L20 [Hevea brasiliensis]
13 Hb_000576_020 0.0809709435 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
14 Hb_001486_340 0.0818774567 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
15 Hb_001433_070 0.0826795369 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
16 Hb_007416_300 0.082981316 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
17 Hb_000853_230 0.0837331688 - - syntaxin, putative [Ricinus communis]
18 Hb_006588_070 0.0855450749 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
19 Hb_000308_030 0.0855874138 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
20 Hb_002311_180 0.0864971232 - - drought-responsive family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_033834_030 Hb_033834_030 Hb_001051_080 Hb_001051_080 Hb_033834_030--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_000120_430 Hb_000120_430 Hb_033834_030--Hb_000120_430 Hb_000020_150 Hb_000020_150 Hb_033834_030--Hb_000020_150 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_001051_080--Hb_000120_430 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_006816_050 Hb_006816_050 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_001143_180--Hb_005337_090 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130 Hb_001433_070 Hb_001433_070 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020 Hb_000120_430--Hb_004631_180 Hb_000120_430--Hb_000020_150 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_116349_070 Hb_116349_070 Hb_000120_430--Hb_116349_070 Hb_028872_090 Hb_028872_090 Hb_000020_150--Hb_028872_090 Hb_063716_100 Hb_063716_100 Hb_000020_150--Hb_063716_100 Hb_000221_250 Hb_000221_250 Hb_000020_150--Hb_000221_250 Hb_000020_150--Hb_183612_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8206 8.24663 9.36823 9.1024 10.1079 11.6138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.78336 9.29758 4.25884 7.85661 4.17274

CAGE analysis