Hb_028872_090

Information

Type -
Description -
Location Contig28872: 64694-74129
Sequence    

Annotation

kegg
ID rcu:RCOM_1081030
description Urease, putative (EC:3.5.1.5)
nr
ID XP_012085638.1
description PREDICTED: urease [Jatropha curcas]
swissprot
ID Q9SR52
description Urease OS=Arabidopsis thaliana GN=URE PE=3 SV=1
trembl
ID A0A067JSC9
description Urease OS=Jatropha curcas GN=JCGZ_17930 PE=3 SV=1
Gene Ontology
ID GO:0009039
description urease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30112: 64716-74027 , PASA_asmbl_30113: 64729-65395 , PASA_asmbl_30114: 65401-73951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_090 0.0 - - PREDICTED: urease [Jatropha curcas]
2 Hb_000163_220 0.0641460514 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
3 Hb_002784_020 0.0654231376 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
4 Hb_000020_150 0.0659294645 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
5 Hb_063716_100 0.0684965381 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
6 Hb_000089_120 0.0734532166 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_003861_050 0.074276203 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
8 Hb_000182_040 0.0771586541 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
9 Hb_002375_010 0.0777076133 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
10 Hb_013399_020 0.0781663784 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
11 Hb_001860_030 0.0785906315 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
12 Hb_000617_180 0.0790590077 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
13 Hb_000417_130 0.0798280472 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
14 Hb_000935_010 0.0804055857 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
15 Hb_004994_010 0.0806436268 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
16 Hb_002217_030 0.0812040683 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
17 Hb_000035_470 0.0812059806 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_000302_310 0.081785887 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
19 Hb_001357_250 0.0827398824 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
20 Hb_000329_800 0.0836965573 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028872_090 Hb_028872_090 Hb_000163_220 Hb_000163_220 Hb_028872_090--Hb_000163_220 Hb_002784_020 Hb_002784_020 Hb_028872_090--Hb_002784_020 Hb_000020_150 Hb_000020_150 Hb_028872_090--Hb_000020_150 Hb_063716_100 Hb_063716_100 Hb_028872_090--Hb_063716_100 Hb_000089_120 Hb_000089_120 Hb_028872_090--Hb_000089_120 Hb_003861_050 Hb_003861_050 Hb_028872_090--Hb_003861_050 Hb_106552_020 Hb_106552_020 Hb_000163_220--Hb_106552_020 Hb_005779_010 Hb_005779_010 Hb_000163_220--Hb_005779_010 Hb_005588_090 Hb_005588_090 Hb_000163_220--Hb_005588_090 Hb_005289_040 Hb_005289_040 Hb_000163_220--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000163_220--Hb_002889_010 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_000120_430 Hb_000120_430 Hb_000020_150--Hb_000120_430 Hb_000020_150--Hb_063716_100 Hb_000221_250 Hb_000221_250 Hb_000020_150--Hb_000221_250 Hb_033834_030 Hb_033834_030 Hb_000020_150--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_000020_150--Hb_183612_040 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_063716_100--Hb_000617_180 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_000261_240 Hb_000261_240 Hb_000089_120--Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_000089_120--Hb_007657_020 Hb_000089_120--Hb_005588_090 Hb_000089_120--Hb_002784_020 Hb_000398_080 Hb_000398_080 Hb_000089_120--Hb_000398_080 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_004994_010 Hb_004994_010 Hb_003861_050--Hb_004994_010 Hb_003861_050--Hb_002889_010 Hb_001377_310 Hb_001377_310 Hb_003861_050--Hb_001377_310 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6112 11.745 17.4908 13.9374 14.3484 17.3734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2479 12.7992 11.2286 19.9378 7.78931

CAGE analysis