Hb_000120_430

Information

Type -
Description -
Location Contig120: 313334-317834
Sequence    

Annotation

kegg
ID tcc:TCM_000021
description Serine/threonine phosphatase 7 isoform 1
nr
ID XP_012087578.1
description PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
swissprot
ID Q9FN02
description Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1
trembl
ID A0A061DKQ5
description Serine/threonine-protein phosphatase OS=Theobroma cacao GN=TCM_000021 PE=3 SV=1
Gene Ontology
ID GO:0004722
description serine threonine-protein phosphatase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06129: 313378-317656 , PASA_asmbl_06130: 313378-317656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_430 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
2 Hb_004631_180 0.0562677955 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
3 Hb_001051_080 0.058304847 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
4 Hb_000020_150 0.0670075031 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
5 Hb_000617_100 0.0676726859 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
6 Hb_033834_030 0.070521162 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
7 Hb_116349_070 0.0726776827 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
8 Hb_005588_090 0.0735310836 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
9 Hb_006916_040 0.076159027 - - 60S ribosomal protein L7a, putative [Ricinus communis]
10 Hb_003549_150 0.0763909491 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
11 Hb_000576_020 0.076428373 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
12 Hb_002835_230 0.078892802 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_001347_040 0.0798186341 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
14 Hb_000928_220 0.0805201712 - - PREDICTED: protein SCAI [Jatropha curcas]
15 Hb_001140_350 0.0816647438 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
16 Hb_002311_070 0.0817125195 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
17 Hb_000089_120 0.0821022512 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000101_380 0.0826445783 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
19 Hb_000309_040 0.0831490129 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
20 Hb_001143_180 0.0832995357 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_430 Hb_000120_430 Hb_004631_180 Hb_004631_180 Hb_000120_430--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_000120_430--Hb_001051_080 Hb_000020_150 Hb_000020_150 Hb_000120_430--Hb_000020_150 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_033834_030 Hb_033834_030 Hb_000120_430--Hb_033834_030 Hb_116349_070 Hb_116349_070 Hb_000120_430--Hb_116349_070 Hb_006916_040 Hb_006916_040 Hb_004631_180--Hb_006916_040 Hb_000576_020 Hb_000576_020 Hb_004631_180--Hb_000576_020 Hb_004631_180--Hb_001051_080 Hb_000256_190 Hb_000256_190 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_028872_090 Hb_028872_090 Hb_000020_150--Hb_028872_090 Hb_063716_100 Hb_063716_100 Hb_000020_150--Hb_063716_100 Hb_000221_250 Hb_000221_250 Hb_000020_150--Hb_000221_250 Hb_000020_150--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_000020_150--Hb_183612_040 Hb_007576_110 Hb_007576_110 Hb_000617_100--Hb_007576_110 Hb_000617_100--Hb_003549_150 Hb_014361_070 Hb_014361_070 Hb_000617_100--Hb_014361_070 Hb_000683_070 Hb_000683_070 Hb_000617_100--Hb_000683_070 Hb_001195_560 Hb_001195_560 Hb_000617_100--Hb_001195_560 Hb_000617_100--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_005588_090 Hb_005588_090 Hb_116349_070--Hb_005588_090 Hb_000089_120 Hb_000089_120 Hb_116349_070--Hb_000089_120 Hb_004267_040 Hb_004267_040 Hb_116349_070--Hb_004267_040 Hb_000120_280 Hb_000120_280 Hb_116349_070--Hb_000120_280 Hb_116349_070--Hb_000617_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5 13.8633 13.5668 16.7526 20.6454 18.0819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6225 13.2856 8.63569 15.6693 6.1454

CAGE analysis