Hb_002175_030

Information

Type -
Description -
Location Contig2175: 25846-41376
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13230g
description POPTRDRAFT_253872; hypothetical protein
nr
ID XP_012082213.1
description PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
swissprot
ID Q8L627
description snRNA-activating protein complex subunit OS=Arabidopsis thaliana GN=SRD2 PE=1 SV=1
trembl
ID B9ID72
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13230g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22475: 26150-31517 , PASA_asmbl_22479: 32019-41416
cDNA
(Sanger)
(ID:Location)		 035_B22.ab1: 32223-32919

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002175_030 0.0 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
2 Hb_001433_070 0.0559059494 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
3 Hb_156973_010 0.0581205892 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000853_230 0.0609517788 - - syntaxin, putative [Ricinus communis]
5 Hb_001089_110 0.0640989079 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010068_040 0.0643016809 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
7 Hb_006620_020 0.0649246383 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
8 Hb_006355_010 0.06532327 - - PREDICTED: protein NLRC3 [Jatropha curcas]
9 Hb_033834_030 0.0658516574 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
10 Hb_000334_270 0.065918619 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_183612_040 0.0676410475 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
12 Hb_000334_280 0.0687991914 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
13 Hb_000926_190 0.0687996603 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
14 Hb_000179_030 0.0690827397 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_003680_150 0.0699043993 - - srpk, putative [Ricinus communis]
16 Hb_023386_040 0.070568759 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
17 Hb_000174_110 0.0706792034 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
18 Hb_023386_020 0.0706951019 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
19 Hb_000484_030 0.0710331888 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
20 Hb_008103_070 0.0716249854 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002175_030 Hb_002175_030 Hb_001433_070 Hb_001433_070 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_010068_040 Hb_010068_040 Hb_002175_030--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_002175_030--Hb_006620_020 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001433_070--Hb_001089_110 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_001089_110--Hb_079526_030 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_010068_040--Hb_001433_070 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_006620_020--Hb_000174_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5009 18.2417 17.8115 15.0961 25.4694 27.301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6497 24.0363 11.0807 19.2468 13.8044

CAGE analysis