Hb_000403_050

Information

Type -
Description -
Location Contig403: 56454-61256
Sequence    

Annotation

kegg
ID rcu:RCOM_0075640
description hypothetical protein
nr
ID XP_012075260.1
description PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LS48
description protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana GN=SG1 PE=1 SV=1
trembl
ID B9SW92
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0075640 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein slow green chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39956: 56480-61261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000403_050 0.0 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
2 Hb_003125_120 0.0491812025 - - PREDICTED: TITAN-like protein [Jatropha curcas]
3 Hb_036790_100 0.058711007 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
4 Hb_000334_280 0.0593620235 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
5 Hb_156973_010 0.0645043691 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001163_050 0.0656173326 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
7 Hb_005271_220 0.0663633629 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
8 Hb_003878_070 0.06784305 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
9 Hb_008453_140 0.0679188933 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
10 Hb_002303_070 0.0679511296 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
11 Hb_001142_030 0.0687410285 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
12 Hb_000302_270 0.0702520221 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_000757_060 0.0707016909 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
14 Hb_000025_410 0.0708301123 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
15 Hb_000484_030 0.0709614164 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
16 Hb_001258_090 0.0711252142 - - PREDICTED: protein spt2-like [Jatropha curcas]
17 Hb_007075_040 0.0711777957 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
18 Hb_001227_030 0.0714405007 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
19 Hb_000215_110 0.072398589 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
20 Hb_000038_170 0.0726449212 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000403_050 Hb_000403_050 Hb_003125_120 Hb_003125_120 Hb_000403_050--Hb_003125_120 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_000334_280 Hb_000334_280 Hb_000403_050--Hb_000334_280 Hb_156973_010 Hb_156973_010 Hb_000403_050--Hb_156973_010 Hb_001163_050 Hb_001163_050 Hb_000403_050--Hb_001163_050 Hb_005271_220 Hb_005271_220 Hb_000403_050--Hb_005271_220 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_003125_120--Hb_000334_280 Hb_003125_120--Hb_001163_050 Hb_008453_140 Hb_008453_140 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030 Hb_001595_030 Hb_001595_030 Hb_036790_100--Hb_001595_030 Hb_001242_060 Hb_001242_060 Hb_036790_100--Hb_001242_060 Hb_002256_030 Hb_002256_030 Hb_036790_100--Hb_002256_030 Hb_001258_090 Hb_001258_090 Hb_036790_100--Hb_001258_090 Hb_000416_040 Hb_000416_040 Hb_036790_100--Hb_000416_040 Hb_003878_070 Hb_003878_070 Hb_000334_280--Hb_003878_070 Hb_003525_010 Hb_003525_010 Hb_000334_280--Hb_003525_010 Hb_000484_030 Hb_000484_030 Hb_000334_280--Hb_000484_030 Hb_000215_110 Hb_000215_110 Hb_000334_280--Hb_000215_110 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_156973_010--Hb_001258_090 Hb_000853_230 Hb_000853_230 Hb_156973_010--Hb_000853_230 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_001163_050--Hb_008453_140 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.87574 6.33535 6.36172 4.96934 6.10598 8.11447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92607 9.65323 5.96783 5.96122 5.44587

CAGE analysis